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7. Science units of study

This chapter provides information on each of the undergraduate units of study offered by the Faculty of Science, as well as additional information on each of the teaching Schools and Departments and interdisciplinary subject areas.

Organisation of unit of study information

The units of study are generally organised alphabetically by School of Departments. EMHU and HSTO units can be found under the entry for Anatomy and Histology. NEUR can be found in the Anatomy or Physiology entries, depending on the principle teaching department for the individual unit. COMP, INFO, ISYS, NETS, MULT AND SOFT can be found under the Information Technologies entry. Further information on Information Technology units can be found in the Faculty of Engineering and Information Technologies Handbook and website. NTMP can be found under the Marine Science entry. STAT can be found under the Mathematics and Statistics entry. VIRO can be found under the Microbiology entry.

Aerospace, Mechanical and Mechatronic Engineering

The School of Aerospace, Mechanical and Mechatronic Engineering is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in aerospace, mechanical, biomedical and mechatronic engineering, units of study in the School are available to students in the Faculty of Science who meet any prerequisite requirements for a particular unit.

Registration

Timetable information on alternative lecture/tutorial/laboratory/practical classes is available in the General Office of the School.

Tutorials and laboratories

All students are required to undertake the tutorial and laboratory work associated with the chosen units of study, details of which are provided in the timetables. The experimental and tutorial work, an integral part of the unit of study, complements the lecture material.

Double degree

Science graduates may obtain up to two years advanced standing towards a Bachelor of Engineering degree in Aerospace, Mechanical, Mechatronic or Biomedical Engineering. Students wishing to undertake this option must apply through UAC and compete on the basis of academic merit. Information about application procedures is available from the Engineering Faculty Office in the Engineering and Information Technologies Faculty Building.

Agricultural Chemistry and Soil Science

Study in the discipline of Agricultural Chemistry is offered by the Faculty of Agriculture, Food and Natural Resources. Units of study in Agricultural Chemistry for Science students cover aspects of chemistry and biochemistry which are relevant in basic and applied biological sciences including agriculture, the environment and food science. The unit of study, Introductory Rural Environmental Chemistry (AGCH2003) introduces students to basic analytical and environmental chemistry. Senior units of study include Chemistry and Biochemistry of Foods A and B (AGCH3025 & AGCH3026) and Land and Water Ecochemistry (AGCH3032). These Senior units of study introduce students to the applied aspects of food chemistry science or to applied environmental chemistry. Emphasis is placed on the chemistry of both naturally occurring molecules of biological, agricultural and environmental significance (eg. in foods and natural fibres), and chemically synthesised (eg. insecticides and herbicides). Agricultural Chemistry Honours is available to students who wish to further their studies in food chemistry or environmental chemistry.
AGCH2003 Rural Environmental Chemistry

Credit points: 6 Teacher/Coordinator: Dr Robert Caldwell Session: Semester 1 Classes: 3 lec/week and 30 hours of lab/semester Prerequisites: 12 credit points of Junior Chemistry Prohibitions: AGCH2001, AGCH2002 and CHEM2404 Assessment: One 2 hr exam, laboratory reports, theory of prac test, lecture quiz
This introductory unit of study consists of aspects of chemistry relevant in studies of basic and applied biological sciences including agriculture, food and the rural environment. Lecture topics include an introduction to quantitative aspects of biophysical, environmental and aquatic chemistry with particular reference to protocols for specimen sampling and maintenance of specimen quality; the principles of basic analytical methods such as spectroscopy, chromatography and electrochemistry; environmental aspects of water such as thermal properties and its behaviour as a solvent of hydrophobic solutes, surfactants, neutral hydrophilic solutes, salts and other electrolytes, and gases. The lectures will also include environmental nutrient cycling (C, N, S, O, P, micronutrients) with reference to pesticides, herbicides, organic and inorganic pollutants affecting agricultural produce and the environment, and gases of environmental concern. Ten laboratory sessions will demonstrate aspects of analytical chemistry including: elemental analysis of foods and natural waters, spectrophotometry, chromatographic techniques, preparation of buffers, fundamentals of pH and conductance measurement, water as a solvent including the effect of surfactants and electrolytes. Students will analyze natural water samples using the skills acquired in earlier laboratory sessions and write an environmental assessment from their findings. An on-line tutorial on safety procedures in a chemistry laboratory is a pre-requisite for commencement of laboratory experiments.
AGCH3025 Chemistry and Biochemistry of Foods A

Credit points: 6 Teacher/Coordinator: Dr Meredith Wilkes, Dr Robert Caldwell, Prof Les Copeland, A/Prof Neil Howes Session: Semester 1 Classes: 3 lec/wk; 21 hrs laboratory Prerequisites: 6 credit points of Intermediate units in either Agricultural Chemistry or Chemistry or PLNT2001 or PLNT2901 or BCHM2071 or BCHM2072 Prohibitions: AFNR5102 Assumed knowledge: 12 credit points of Junior chemistry Assessment: One 2 hr theory exam, one 1 hr theory of prac exam, practical reports, lecture quizzes
This unit of study aims to give students an understanding of the properties, relationship between form and function and fitness for purpose (quality) of food components, and the interactions between these components during storage, processing and digestion. The unit will develop an understanding of the role of agricultural products as foods. Students will gain an appreciation of the biochemical systems we know as foods and will build upon knowledge gained in intermediate levels of biochemistry. Students will explore the relationship between chemical composition and structure of macro- and micro-constituents and their function in foods. Students will also develop an analytical approach in understanding of the biochemistry of food formulations, processing and storage stability. At the completion of this unit, students will be able to describe the chemistry, biochemistry and processing behaviour of major food constituents such as carbohydrates, proteins, lipids, natural fibres and gel-forming polymers. They will also be able to demonstrate an understanding of the functionality of these constituents and gain experience in laboratory techniques used in industry for the analysis of some of these compounds in actual food products. Students will gain research and inquiry skills by mastering the key theories and concepts presented in lecture material and practical classes. Students will also gain information literacy and communication skills by using various sources of information for the synthesis of material required for practical reports. At the end of the unit students should also have an enhanced understanding of the role of agriculture in Australian and International food production systems.
Textbooks
There is no recommended textbook. Laboratory notes will be available for purchase from the Copy Centre in the first week of semester and lecture notes will be made available through WebCT
AGCH3026 Chemistry and Biochemistry of Foods B

Credit points: 6 Teacher/Coordinator: Dr Meredith Wilkes, Dr Robert Caldwell, Prof Les Copeland, A/Prof Neil Howes Session: Semester 1 Classes: 3 lec/wk and 21 hrs laboratory Prerequisites: 6 credit points of Intermediate Agricultural Chemistry or PLNT2001 or PLNT2901 or BCHM2071 or BCHM2072 Corequisites: AGCH3025 Prohibitions: AFNR5103 Assumed knowledge: 12 units of Junior chemistry Assessment: One 2 hr exam, practical reports, theory of practical exam, oral and written presentation on a case study
This unit aims to give students an understanding of the biochemistry of processing of raw products used in food manufacture, with special emphasis placed on current issues faced by the food industry. The unit is designed to build upon intermediate levels of chemistry and biochemistry by developing a deeper understanding of how biochemical molecules contained in raw products affect the processing, manufacture and quality of foods. It complements AGCH3025 by applying the knowledge gained in that unit in food processing procedures. The teaching covers the use of enzymes in food processing and diagnostic analysis, the types of raw products used in foods and their processing, the chemistry of raw products with special attention given to proteins, doughs and baking technologies, the reactions that occur during processing and the evaluation of foods. Students will gain exposure to a wide range of food related issues through the presentation of lectures by invited speakers with industry experience. At the end of this unit students will understand the chemistry of doughs and the changes that occur in baked goods, the role of enzymes in the food industry and the processing of raw ingredients and the products produced. Students will also have an enhanced understanding of issues that face Australian and international agricultural practices and current issues presented by an increasingly global food processing industry. Students will gain research and inquiry skills by mastering the key theories and concepts presented in lecture material and practical classes. Students will also gain information literacy and communication skills by using various sources of information for the synthesis of material required for practical reports and an oral presentation. At the end of the unit students should also have an enhanced understanding of the role of agriculture in Australian and international food production systems.
Textbooks
No recommended text. Laboratory notes will be available for purchase from the Copy Centre in the first week of semester and lecture notes will be available through the unit WebCT site.
AGCH3032 Land and Water Ecochemistry

Credit points: 6 Teacher/Coordinator: Professor Ivan Kennedy, Dr Robert Caldwell Session: Semester 2 Classes: 5-day field trip in AVCC common break; 20 hr lectures/tutorials, 25 hr laboratory classes and project during semester Prerequisites: AGCH2003 or AGCH2004 or PLNT2001 or CHEM24XX or BCHM2XXX or ENVI2001 Prohibitions: AGCH3030, AGCH3031 Assessment: One 2 hr exam, field trip report and presentation, prac and project reports
This field-oriented unit will develop professional expertise in rural ecochemistry, measuring impacts on sustainability and seeking solutions to chemical problems at the catchment scale. AGCH3032 is an elective unit suitable for the BSc, BScAgr, BLWSc, BHortSc, BResEc and BAnVetBioSc degrees, building on intermediate units in chemistry or biochemistry. It will promote knowledge and professional skills related to key chemical processes in ecosystems causing risks to soil and water resources, the quality of agricultural produce and to ecological biodiversity. These will be examined by quantitative risk analysis, targeted monitoring and remediation, seeking innovative solutions (e.g. IPM and genetic modification). A field trip in the AVCC break and professional report on a chosen topic will investigate relevant case studies at selected centres in eastern Australian doing innovative research on global warming and climate change, soil and water quality and environmental protection. Lectures will provide knowledge in the environmental C, N and S cycles important for sustaining action in ecosystems, the nature of greenhouse gases and mitigation of their production including C sequestration, risks to biota (soil, water, plants, animals) from acidification and innovative means of remediation, environmental risk from pesticides and other pollutants, monitoring and their remediation. In laboratory exercises, students will gain skills in relevant analyses using GC, LC, mass spectrometry and ELISA. The assessment procedures are designed to provide students with skills in definition of research problems and risk assessment, quality in analyses, risk management and remediation, and effective communication of outputs.

Agricultural Chemistry Honours

Honours in Agricultural Chemistry aims to: provide students with problem-solving and communication skills required by professional chemists in enterprises concerned with agricultural production and processing, foods and beverages, and environmental science; enable students to learn to work independently in a laboratory environment; familiarise students with the research literature and methodology of biological chemistry; and provide a basis for students who wish to proceed to postgraduate research. Candidates should consult the Department as soon as possible after results in Senior units of study are obtained. The unit of study consists of a research project and four 6 credit point units of study. The research project component includes oral as well as written forms of assessment. Projects are usually available in one of the following areas of current research interest in the Department: carbohydrate and nitrogen metabolism in plants, biological nitrogen fixation and biofertilisers, greenhouse gas production, the biochemistry and environmental chemistry of pesticides and herbicides, environmental risk assessment, acidification of ecosystems, residue analysis in foods, aspects of food science including oil seed and cereal chemistry and biochemistry

Soil Science

The Soil Science units of study aim primarily at giving students an introduction to the three major branches of soil science, namely soil physics, soil chemistry, and pedology, and at providing the basis for a professional career in each of these divisions for students wishing to specialise. The introductory unit of study is particularly relevant for students interested in the environmental and geological sciences and in land-use management. For a major in soil Science, the minimum requirement is completion of SOIL3008, 3009 and 3010 and one of (AGCH3032 or LWSC3006 or PPAT4005)
SOIL2003 Soil Properties and Processes

Credit points: 6 Teacher/Coordinator: A/Prof Balwant Singh (Coordinator), Prof Alex McBratney, Dr Stephen Cattle Session: Semester 1 Classes: (3 lec & 3hr prac)/wk Assessment: Prac book and fieldtrip report (15%), 3 Quizzes (15%), essay (5%), practical exam (25%), written exam (40%)
This unit of study is designed to introduce students to the fundamental concepts within pedology, soil physics and soil chemistry. These concepts are part of the grounding principles that underpin crop and animal production, nutrient and water cycling, and environmental sustainability taught by other units of study in the Faculty. Referring to common soil profiles in NSW, students will concentrate on factors affecting soil formation, the rudiments of soil description, and analysis of soil properties that are used in soil classification. Students will also develop knowledge of the physics of water and gas movement, soil strength, soil chemical properties, inorganic and organic components, nutrient cycles and soil acidity in an agricultural context. At the end of this unit students will become familiar with the factors that determine a soil's composition and behaviour, and will have an understanding of the most important soil physical and chemical properties. Students will develop communication skills through essay, report and practical exercises. The final report and laboratory exercise questions are designed to develop team work and collaborative efforts.
Textbooks
Campbell, K.O. & Bowyer, J.W. (eds) (1988). The Scientific Basis of Modern Agriculture. Sydney University Press.
SOIL2004 The Soil Resource

Credit points: 6 Teacher/Coordinator: Dr Stephen Cattle (Coordinator), Prof Alex McBratney, A/Prof Balwant Singh Session: Semester 2 Classes: (2 lec, 2 pracs)/wk, 24 hr (5 days) field work out of semester time Assessment: Literature review exercise (10%), soil description and mapping report (20%), laboratory report (15%), 2 hr exam (50%), field excursion participation (5%)
This unit will familiarize students with the description and mapping of soil types in the Australian landscape, with common analytical methods for soil and with the various forms of degradation that may alter the quality and function of soil. It is an applied soil science unit which builds on the fundamental soil science concepts learned in the SOIL2003 unit. The first practical component of the unit, a five-day soil survey, will give students experience in soil description and classification in the field, and soil samples collected during this survey will be subsequently analysed for a variety of attributes by the students in laboratory practicals. In the lecture series, topics including soil type distribution, soil quality, soil function, soil fertility and soil degradation will be discussed and linked to practical sessions. By the end of this unit, students will be able to construct maps of soil properties and soil type distribution, describe primary soil functions, soil attributes and types of soil degradation in an agricultural context, and be able to recognize and communicate the ability of a soil profile to sustain plant growth. Students will gain research and inquiry skills by collecting, analyzing and interpreting soil survey data. They will improve their information literacy skills by carrying out a literature review exercise, and will gain communication skills by having to prepare and present a poster.
Textbooks
Brady NC & Weil RR. (2002) The Nature and Properties of Soils. 13th ed. (or any later edition) Prentice Hall, New Jersey.
SOIL3008 Rural Spatial Information Systems

Credit points: 6 Teacher/Coordinator: Dr I Odeh Session: Semester 1 Classes: (2 lec, 2hr prac)/wk, four-day field trip Assessment: One 15 min presentation (10%), 3500w prac report (35%), 1500w report on field excur (15%), one 2 hr exam (40 %)
This unit is designed to impart knowledge and skills in spatial analysis and geographical information science (GISc) for decision-making— in rural context. The unit of study is intended to introduce students to modern geospatial analysis and GISc technologies. It is offered as a core unit for BLWSc students and as an elective for BScAgr, BHortSc, BSc and BResEc students. The lecture material will present several themes: principles of GISc, fundamentals of remote sensing and geo-image analysis, geospatial data sources and acquisition methods, processing of geospatial data and spatial statistics. Practical exercises will focus on learning geographical information systems (GIS) and how to apply them to land resource assessment, including digital terrain modelling, land-cover assessment, sub-catchment modelling, and soil quality assessment for decisions regarding sustainable land use and management. A 4 day field excursion during the mid-semester break will involve a day GPS fieldwork at Arthursleigh University farm and three days in Canberra visiting various government agencies which research and maintain GIS coverages of major rural environments. By the end of this UoS, students should be able to: differentiate between spatial data and spatial information; source geospatial data from government and private agencies; apply conceptual models of spatial phenomena for practical decision-making in rural context; apply critical analysis of situations to apply the concepts of spatial analysis to solving environmental and land resource problems; communicate effectively results of GIS and remote sensing investigations through various means- oral, written and essay formats; and use a major GIS software package such as ArcGIS
Textbooks
Burrough, P.A. and McDonnell, R.A. 1998. Principles of Geographic Information Systems. Oxford University Press: Oxford.
SOIL3009 Contemporary Field and Lab Soil Science

Credit points: 6 Teacher/Coordinator: Prof Alex McBratney (coordinator), A/Prof Balwant Singh, Dr Stephen Cattle, Dr Budiman Minasny Session: Semester 1 Classes: (2 lec, 2 prac)/wk, 6-day field excursion Prerequisites: SOIL2003 Assessment: One 2hr exam; pedology, soil physics and soil chemistry written assessments; group presentation, synthesis paper
This is a theoretical and empirical unit providing specialised training in three important areas of contemporary soil science, namely pedology, soil chemistry and soil physics. The key concepts of these sub-disciplines will be outlined and strengthened by hands-on training in essential field and laboratory techniques. All of this is synthesized by placing it in the context of soil distribution and use in North-Western New South Wales. The unit is motivated by the teaching team's research in this locale. It builds on students existing soil science knowledge gained in SOIL2003. After completion of the unit, students should be able to articulate the advantages and disadvantages of current field & laboratory techniques for gathering necessary soil information, and simultaneously recognise key concepts and principles that guide contemporary thought in soil science. Students will be able to synthesise soil information from a multiplicity of sources and have an appreciation of the cutting edge areas of soil research. By investigating the contemporary nature of key concepts, students will develop their skills in research and inquiry. Students will develop their communication skills through report writing and oral presentations and will also articulate an openness to new ways of thinking which augments intellectual autonomy. Teamwork and collaborative efforts are encouraged in this unit.
Textbooks
D. Hillel. 2004. Introduction to Environmental Soil Physics. Elsevier Science, San Diego, CA, USA
SOIL3010 The Soil at Work

Credit points: 6 Teacher/Coordinator: Prof Alex McBratney (coordinator) A/Prof Balwant Singh, Dr Stephen Cattle (facilitators) plus research-only academics Session: Semester 2 Classes: Problem-based unit: each student completes 2 problems; 4 x 3 hr workshops per problem (each student attends 8 workshops in total) Prerequisites: SOIL2003 or SOIL2004 Assessment: For each of two scenarios: Statement of the problem report (12.5%) - shared info, but two team reports; How to tackle problem seminar (12.5%) - team seminars, before fieldwork, analyses done; Results seminar (12.5%) - team seminars; Final report (12.5%) - individual work
This is a problem-based applied soil science unit. It is designed to allow students to identify soil-related problems in the real-world and by working in a group and with an end-user to suggest short and long-term solutions to such problems. This is a core unit for students majoring or specializing in soil science and an elective unit for those wishing to gain an understanding of environmental problem-solving. It utilises and reinforces soil-science knowledge gained in SOIL2003 and/or SOIL2004 and problem-solving skills gained during the degree program. This unit will address real-world scenarios which involve soil-related problems such as carbon management, structural decline, acidification, salinisation and contamination. Students will gain some understanding of the concept of sustainability, and will be able to identify the causes of problems by reference to the literature, discussion with landusers and by the design and execution of key experiments and surveys. They will gain a focused knowledge of the key soil drivers to environmental problems and will have some understanding on the constraints surrounding potential solutions. By designing and administering strategies to tackle real-world soil issues students will develop their research and inquiry skills and enhance their intellectual autonomy. By producing reports and seminars that enables understanding by an end-user students will improve the breadth of their communication skills.
Textbooks
I.W.Heathcote 1997. Environmental Problem Solving: A Case Study Approach. McGraw-Hill, New York, NY, USA
AGCH3032 Land and Water Ecochemistry

Credit points: 6 Teacher/Coordinator: Professor Ivan Kennedy, Dr Robert Caldwell Session: Semester 2 Classes: 5-day field trip in AVCC common break; 20 hr lectures/tutorials, 25 hr laboratory classes and project during semester Prerequisites: AGCH2003 or AGCH2004 or PLNT2001 or CHEM24XX or BCHM2XXX or ENVI2001 Prohibitions: AGCH3030, AGCH3031 Assessment: One 2 hr exam, field trip report and presentation, prac and project reports
This field-oriented unit will develop professional expertise in rural ecochemistry, measuring impacts on sustainability and seeking solutions to chemical problems at the catchment scale. AGCH3032 is an elective unit suitable for the BSc, BScAgr, BLWSc, BHortSc, BResEc and BAnVetBioSc degrees, building on intermediate units in chemistry or biochemistry. It will promote knowledge and professional skills related to key chemical processes in ecosystems causing risks to soil and water resources, the quality of agricultural produce and to ecological biodiversity. These will be examined by quantitative risk analysis, targeted monitoring and remediation, seeking innovative solutions (e.g. IPM and genetic modification). A field trip in the AVCC break and professional report on a chosen topic will investigate relevant case studies at selected centres in eastern Australian doing innovative research on global warming and climate change, soil and water quality and environmental protection. Lectures will provide knowledge in the environmental C, N and S cycles important for sustaining action in ecosystems, the nature of greenhouse gases and mitigation of their production including C sequestration, risks to biota (soil, water, plants, animals) from acidification and innovative means of remediation, environmental risk from pesticides and other pollutants, monitoring and their remediation. In laboratory exercises, students will gain skills in relevant analyses using GC, LC, mass spectrometry and ELISA. The assessment procedures are designed to provide students with skills in definition of research problems and risk assessment, quality in analyses, risk management and remediation, and effective communication of outputs.
LWSC3006 Landscape Hydrology and Management

Credit points: 6 Teacher/Coordinator: Dr Willem Vervoort Session: Semester 1 Classes: (2 lec, 0.6 on-line 2.4 prac )hr/wk Prerequisites: LWSC2002 or GEOG2321 Assessment: On-line activities 10%; oral presentation 10%; practical reports 50%; 2 hr exam 30%
This unit of study is designed to allow students to examine catchment-scale hydrological modeling, groundwater hydrogeochemistry as an investigative tool for water quality and policy making at the catchment level. It is a core unit for students in BLWSc and builds on the theoretical knowledge gained in LWSC3004, GEOG2321 and LWSC2002. In the first part, students will investigate several ways to simulate catchment hydrological processes and review the possibilities and impossibilities of using simulation models for catchment management. In the second part students will apply hydrogeochemical techniques to investigate groundwater quality and review recent developments in catchment-based management strategies to control salinity and pollution. At the end of this unit, students will be able to articulate advantages and disadvantages of using simulation models for catchment management, justify the choice of a simulation model for a particular catchment management problem, identify issues in relation to uncertainty, apply hydrogeochemical investigation techniques for groundwater and describe innovative strategies for salinity and pollution control. The students will gain research and inquiry skills through research based group projects, information literacy and communication skills through on-line discussion postings, laboratory reports and a presentation and personal and intellectual autonomy through working in groups.
PPAT4005 Soil Biology

Credit points: 6 Teacher/Coordinator: Prof David Guest Session: Semester 1 Classes: (2 tut, 3 hrs prac)/wk Prerequisites: MICR2024 or 6cp intermediate microbiology Assessment: Tutorial papers (30%), project proposal (10%), project report (50%), peer review (10%)
This unit investigates the diversity of organisms living in the soil, their biology, interactions and ecology, and their roles in maintaining and improving soil function. The unit is an elective for BScAgr, BHortSc and BSc students. It builds on the material introduced in MICR2024, PPAT3003 and BIOL3017. Undertaking this unit will develop skills in monitoring soil microbes, designing, conducting and analysing experiments. At the completion of this unit, students will be able to exercise problem-solving skills (developed through practical experiments, projects and tutorial discussions), think critically, and organise knowledge (from consideration of the lecture material and preparation of project reports), and expand from theoretical principles to practical explanations (through observing and reporting on project work). Students will consolidate their teamworking skills, develop self-directed study skills and plan effective work schedules, use statistical analysis in research, keep appropriate records of laboratory research, work safely in a research laboratory and operate a range of scientific equipment. Students will gain research and inquiry skills through group research projects, information literacy and communication skills through assessment tasks and personal and intellectual autonomy through working in groups.
Textbooks
Sylvia et al. 2005. Principles and Applications of Soil Microbiology 2nd ed. Pearson.
Soil Science Honours
The honours program consists of several parts: (i) supplementary lectures and seminars; (ii) topics of study selected from Agricultural Chemistry, Biometry, Botany, Geology, Physical Chemistry, Mathematics, Soil Mechanics, Soil Microbiology, etc; (iii) a small amount of field work performed under direction; and (iv) a project in one branch of soil science.

Anatomy and Histology

The Discipline of Anatomy and Histology teaches topographical and neuroanatomy, histology and cell biology, developmental biology and physical anthropology to students in the Faculties of Science, Medicine and Dentistry.

Location

The Office is in the Anderson Stuart Building. The Discipline Office is on the first floor, Room S463.

Noticeboards

The noticeboards are situated near Room S463. Students are advised to consult the noticeboard regularly. Timetables for lectures and practical classes will be posted, where possible, in the week before the beginning of each semester.

Advice on units of study and enrolment

Students wishing to enrol in units of study in Anatomy and Histology must consult the Discipline advisers in the Enrolment Centre during re-enrolment week prior to enrolling in the units of study. Information will be available at this time on the units of study offered by the Discipline and on the advisability of various combinations of subjects.

Registration

All students should register with the Discipline. Please consult the Discipline's noticeboards for details.

Vaccinations

All students studying gross anatomy or neurosciences who may also be exposed to human tissues or fluids should contact the University Health Service regarding vaccinations.

Protective Clothing

All students studying gross anatomy or neurosciences must wear a laboratory coat or gown in tutorial rooms and a gown in dissection rooms and must wear gloves when handling cadaveric material. Closed footwear must be worn in both tutorial rooms and dissection rooms.

Website

The Department's website is located at www.anatomy.usyd.edu.au
ANAT2008 Principles of Histology

Credit points: 6 Teacher/Coordinator: Professor Maria Byrne Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week; online and museum exercises (6 hours per week total) Prerequisites: 12 credit points of Junior Biology or Junior Psychology Prohibitions: ANAT2001 Assumed knowledge: General concepts in human biology Assessment: One 1 hour theory exam, one 1 hour practical exam, four quizzes
This unit of study covers the principles of cell biology and study of the structure of cells, tissues and organ systems at the light and electron microscopic levels. The focus is on human systems. Extension exercises introduce students to the connection between histology and anatomy. Modern practical applications of histological techniques and analysis for research are also presented.
Textbooks
Ross, MH and Paulina W. Histology-A Text and Atlas. 5th Edition, Lippincott Williams and Wilkins, New York. 2006
ANAT2009 Comparative Primate Anatomy

Credit points: 6 Teacher/Coordinator: Dr Denise Donlon Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week; museum project. Prerequisites: 12 credit points of Junior Biology or Junior Psychology or Junior Archaeology. Prohibitions: ANAT2002 Assumed knowledge: Knowledge of basic vertebrate biology Assessment: One 1 hour theory exam, one 30 min prac exam, two quizzes, one 2000 word essay
This unit of student covers the musculo-skeletal anatomy of the human body with particular emphasis on human evolution and comparisons with apes and fossil hominids. The topics covered include the versatility of the human hand, in manipulation and locomotion, bipedalism, climbing and brachiation in apes, and the change in pelvic anatomy associated with bipedalism and obstetric consequences.
Textbooks
Kapit, W and Elson, LM The Anatomy Coloring Book. Addison-Wesley. 2001
ANAT2010 Concepts of Neuroanatomy

Credit points: 6 Teacher/Coordinator: Dr Karen Cullen Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: BIOL (1003 or 1903) and one of: ANAT2008 or BIOL (1002 or 1902) or MBLG(1001 or 1901 or 2071 or 2971) or PSYC (1001 and 1002). Students must have a grade of credit in at least one of the prerequisite units. Prohibitions: ANAT2003 Assumed knowledge: Background in basic cell biology and basic mammalian biology. Assessment: One 1.5 hour theory exam, one 1 hour practical exam, 2000 word essay, practical reports
Students are introduced to the structure and organisation of the central and peripheral nervous system. The course begins with an exploration into the make-up of the individual cells, followed by an examination of the different regions of the nervous system. A final theme of the course touches on the organisation of various systems (sensory and motor), together with aspects of higher-order function (memory). In essence, the course covers general concepts of organisation, structure and function of the brain and its different areas. The practicals offer students the unique opportunity to examine specimens in the Anatomy labs and museum. This course will be of considerable interest to students studying science and related disciplines, as well as those wishing to pursue further study in Neuroscience at senior levels.
Textbooks
Bear, MF, Connors, BW and Paradiso, MA. Neuroscience: Exploring the Brain. Second edition. Williams and Wilkins. 2001.
ANAT3004 Cranial and Cervical Anatomy

Credit points: 6 Teacher/Coordinator: Dr Robin Arnold Session: Semester 2 Classes: Two 1 hour lectures and one 3-4 hour tutorial per week. Prerequisites: ANAT2002 or ANAT2009 or BMED2803 or BMED2804 or BMED2805 or BMED2806 Prohibitions: ANAT3005 Assumed knowledge: General knowledge of biology. Assessment: One 1.5 hour theory exam, one 1 hour prac exam, one 2500 word essay, continuous assessment (10%)
Note: The completion of 6 credit points of MBLG is highly recommended.
This unit of study covers skull, muscles of facial expression, muscles of jaw and neck, ear, eye, nose, oral cavity and larynx and pharynx as well as peripheral distribution of cranial nerves in the head and neck. The functional components of the cranial nerves and their relationship to the special senses and special motor functions such as facial gesture and speech are also studied. Tutorials are designed to encourage students to develop their own approach to the understanding and organisation of subject material. Communication of key concepts and presentation of subject material in an academic context are encouraged and assessed in a major assignment.
Textbooks
Mackinnon and Morris. Oxford Textbook of Functional Anatomy, Vol 3: Head & Neck. Oxford University Press. 1990
ANAT3904 Cranial & Cervical Anatomy (Advanced)

Credit points: 6 Teacher/Coordinator: Robin Arnold and Laura Lindsay Session: Semester 2 Classes: 1-2 lectures per week 1 x one hour tutorial per week Prerequisites: For Medical Science: Credit in BMED(2803 or 2804 or 2805 or 2806). For BSc and other students Credit in ANAT(3007 or 2002 or 2009). Prohibitions: ANAT3004 Assessment: theory exam, practical spot test, essay, participation in dissection practicals and the production of detailed weekly reports of the dissection carried out in that week. Practical field work: 1 x 3 hour dissection per week
Note: Department permission required for enrolment
Note: Students must receive permission from the coordinators for enrolment
This unit of study is an alternative to ANAT3004 Cranial & Cervical for talented students with a special interest in and need for dissection experience. The lecture/tutorial component of the course is run in conjunction with ANAt3004. Students in the advanced course will study the anatomy of the skull, muscles of face, jaw and neck, eye, ear, nose oral cavity, larynx and pharynx as well as the peripheral distribution of cranial nerves in the neck. Dissection will allow students to find these structures in donated human cadavers for themselves and to study and to understand at least some of the many anomalies and variations which characerise human cranial and cervical anatomy.
Textbooks
An Anatomy atlas such as Rohan, Yokochi, Lutjen-Drecoll, Colour Atlas of Human Anatomy
ANAT3006 Forensic Osteology

Credit points: 6 Teacher/Coordinator: Dr Denise Donlon Session: Semester 1 Classes: Two 1 hour lectures, one 2 hour tutorial and one 1 hour practical per week. Prerequisites: Credit in ANAT2009 or Credit in ANAT2002 (for students who completed Intermediate study before 2005) Assumed knowledge: An understanding of basic human musculoskeletal anatomy. Assessment: One 1.5 hour theory exam, one 30 min. prac exam, continuous assessment, case study
Note: The completion of 6 credit points of MBLG is highly recommended.
This unit of study aims to introduce students to the area of forensic osteology, which is the study of human skeletal remains within the legal context. Thus the unit of study aims to help students learn about human morphology and variation through the investigation and identification of human bones. It will also help students gain skills in observation and rigorous record taking and in analysis and interpretation. Production of case reports and practice in acting as 'expert witness' will improve students written and oral skills. An additional objective will be to assist students in learning to deal with legal and ethical issues.
Textbooks
White, T & Folkens, P. Human Bone Manual, Elsevier. 2005.
ANAT3007 Visceral Anatomy

Credit points: 6 Teacher/Coordinator: Dr Robin Arnold Session: Semester 1 Classes: Two 1 hour lectures and one 3-4 hour practical per week. Prerequisites: ANAT2009 or ANAT2010 Assumed knowledge: General knowledge of biology. Assessment: One 1.5 hour theory exam, one 1 hour prac exam, one 1200 word essay
This unit of study aims to provide an understanding of the anatomy of the viscera of the thorax, abdomen and pelvis. Structures covered include the heart and associated great vessels, lungs, mediastinum and the abdominal viscera, the alimentary organs and the genitourinary system. The structure of anterior thoracic and abdominal walls and pelvis along with the nerve supply to the viscera and relevant endocrine structures is also covered. Emphasis is placed on the relationship of structure to function especially with respect to the important functions of breathing, digestion, excretion and reproduction. Students will also be encouraged to relate their understanding of the structures studied to current research into these structures in related fields such as molecular biology and physiology.
Textbooks
Rohan, Yokochi and Lutjen-drecoll. Color Atlas of Human Anatomy.
ANAT3008 Musculoskeletal Anatomy

Credit points: 6 Teacher/Coordinator: Dr Richard Ward Session: Semester 2 Classes: Two 1 hour lectures, two 2 hour tutorial/practical per week. Prerequisites: ANAT2009 or ANAT2002 (for students who completed Intermediate study before 2005) or BMED2803 or BMED2804 or BMED2805 or BMED2806 Prohibitions: ANAT3005 Assumed knowledge: Some knowledge of basic mammalian biology Assessment: One assignment, one 1 hour prac exam, one 1.5 hour theory exam.
The unit provides an opportunity for students to study the topographical and systems anatomy of the upper limb, lower limb and the back regions. Emphasis is placed upon the identification and description of structures and the correlation of structure with function. This includes for the upper limb, its role in manipulation, for the lower limb standing and walking and for the back flexible support and protection. Emphasis is also given to the innervation of the limbs. The unit also aims to develop the general skills of observation, description, drawing, writing and discussion as applying to biological structure.
EMHU3001 Electron Microscopy and Imaging/Theory

Credit points: 6 Teacher/Coordinator: Dr Anne Swan and Dr Alan Jones Session: Semester 2 Classes: Four 1 hour lectures and one 1 hour tutorial per week. Prerequisites: At least 12 cp of Intermediate Science units from any of the following: Anatomy & Histology, Biochemistry, Biology, Chemistry, Mathematics, Microbiology, Molecular Biology & Genetics, Pharmacology, Physics, Physiology or Statistics. For BMedSc students: either 36 cp of Intermediate units including BMed (2501, 2503 & 2505) or 42 cp of BMed Intermediate units including (2801, 2802, 2803 & 2806) Assumed knowledge: General concepts in Biology, and in Biochemistry or in Chemistry. Assessment: Two 1 hour exams, theoretical research assignment as a PowerPoint (TM) submission and protocol.
The course is run conjointly by the Department of Anatomy and Histology and the Electron Microscope Unit. The course will focus on the theoretical aspects of transmission and scanning electron microscopy, the preparation of biological samples for electron microscopy, digital imaging, and freeze-fracture. Immunological and other techniques required in modern research and hospital electron microscope laboratories will also be covered. Students will also receive theoretical training in laser scanning confocal microscopy including the use of fluorescent probes to visualize cellular organelles and cellular processes. Students will undertake a theoretical research project of their choice which is of relevance to the course.
Textbooks
Bozzola JJ and Russell LD. Electron Microscopy. 2nd Edn. Jones and Bartlett, Publishers. 1999.
EMHU3002 Electron Microscopy and Imaging/Prac

Credit points: 6 Teacher/Coordinator: Dr Anne Swan and Dr Alan Jones Session: Semester 2 Classes: Two 2 hour practicals and one 1 hour tutorial per week. Prerequisites: 12 cp as follows: 6 cp from ANAT2008 OR 4 cp from ANAT2001 plus at least 6 cp OR 8 cp respectively of Intermediate Science units of study. For BMedSci: Either 36 credit points of intermediate units including BMed (2501, 2503 & 2505) or 42 credit points of BMed Intermediate units including BMed (2801, 2802, 2803 & 2806) Corequisites: EMHU3001 Assumed knowledge: General concepts in Biology, Histology and in Biochemistry or in Chemistry. Assessment: Two 1 hour exams, practical reports, practical project assignment by PowerPoint (TM) submission and presentation (10 min).
The course is run conjointly by the Department of Anatomy & Histology and the Electron Microscope Unit. The course will provide hands-on training in the operation of transmission and scanning electron microscopes, processing biological samples for electron microscopy, ultrathin sectioning, cryo-ultramicrotomy, freeze-fracture, electron diffraction, digital imaging, immunological and other techniques required in modern research and hospital electron microscope laboratories. Students will also learn the operation of laser scanning confocal microscopes, including the use of fluorescent probes to visualise cellular organelles and cellular processes. Students will apply their knowledge to complete a project of their choice on electron microscopy of a biological sample, from fixation of the sample to interpretation of the resulting electron micrographs.
Textbooks
Bozzola JJ and Russell LD. Electron Microscopy. 2nd Edn. Jones and Bartlett, Publishers. 1999.
HSTO3001 Microscopy & Histochemistry Theory

Credit points: 6 Teacher/Coordinator: Robin Arnold, Prof. Chris Murphy Session: Semester 1 Classes: Usually four 1 hour lectures per week plus some tutorials Prerequisites: (ANAT2008 or ANAT2001) or (BMED 2803 or 2804 or 2805 or 2806) Corequisites: HSTO3002 Assumed knowledge: Basic understanding of biology. Assessment: One 2 hour theory exam.
The aims of this unit of study are to provide a theoretical understanding of why biological tissues need to be specifically prepared for microscopic examination, how differing methods yield different types of morphological information; to allow students to study the theory of different types & modalities of microscopes, how they function & the differing information they provide; to develop an understanding of the theory of why biological material needs to be stained for microscopic examination; to allow students to understand how biological material becomes stained; to develop an understanding of the chemical information provided by biological staining - dyes, enzymes & antibodies.
Textbooks
Keirnan, J.A. Histological & Histochemical Methods 3rd Edition, 1999, Butterworth-Heinmann.
HSTO3002 Microscopy & Histochemistry Practical

Credit points: 6 Teacher/Coordinator: Robin Arnold, Prof. Chris Murphy Session: Semester 1 Classes: Usually 5.5 hours practical per week Prerequisites: (ANAT2008 or ANAT2001) or (BMED 2803 or 2804 or 2805 or 2806) Corequisites: HSTO3001 Assumed knowledge: Basic understanding of biology. Assessment: One 1.5 hour practical exam, 1 practical report, essay.
The aims of this unit of study are to provide an practical understanding of why biological tissues need to be specifically prepared for microscopic examination, to apply different methods to gain different types of morphological information; to allow students to learn to use the different types & modalities of microscopes: to gain first hand experience of how they function & see for themselves the differing information they provide; to learn to stain biological material for microscopic examination; applying their theoretical knowledge & to allow students to develop practical skills in diverse histochemical staining procedures - dyes, enzymes & antibodies.
Textbooks
Keirnan, JA. Histological & Histochemical Methods 3rd Edition. Butterworth-Heinmann. 1999.
HSTO3003 Cells and Development: Theory

Credit points: 6 Teacher/Coordinator: Dr Frank Lovicu Session: Semester 2 Classes: Four 1 hour theory lectures and one 1 hour tutorial per week. Prerequisites: For BSc students: ANAT2008 or ANAT2001 For BMedSc students: 42 credit points of Intermediate BMED units, including: BMED2801, 2802, 2805. Prohibitions: ANAT3002, EMHU3001, EMHU3002 Assumed knowledge: (i) An understanding of the basic structure of vertebrates; (ii) An understanding of elementary biochemistry and genetics. Assessment: One 2 hour exam, tutorial research papers.
Note: The completion of 6 credit points of MBLG is highly recommended.
The main emphasis of this unit of study concerns the mechanisms that control animal development. Fertilisation, cleavage, gastrulation and the formation of the primary germ layers are described in a range of animals, mainly vertebrates. Much of the emphasis will be placed on the parts played by inductive cell and tissue interactions in cell and tissue differentiation, morphogenesis and pattern formation. This will be studied at both cellular and molecular levels.
Textbooks
Gilbert SF Developmental Biology. 8th edn. Sinauer Associates Inc: Sunderland, Mass. 2006.
HSTO3004 Cells and Development: Practical (Adv)

Credit points: 6 Teacher/Coordinator: Dr Frank Lovicu Session: Semester 2 Classes: One 1 hour tutorial and two 2 hour practicals per week. Prerequisites: Note: This advanced unit of study is only available to select students who have achieved a mark of 65 or above in the following prerequisite units of study. For BSc students: ANAT2008 or ANAT2001. For BMedSc students: 42 credit points of Intermediate BMED units, including: BMED2801, 2802, 2805. Corequisites: HSTO3003 Prohibitions: ANAT3002, EMHU3001, EMHU3002 Assessment: One 1 hour exam, Practical class reports.
Note: The completion of 6 credit points of MBLG is highly recommended.
This advanced unit of study complements HSTO3003 (Cells and Development:Theory) and is catered to provide students with laboratory research experience leading to Honours and higher degrees. It will primarily cover the design and application of experimental procedures involved in cell and developmental biology, using appropriate molecular and cellular techniques to answer developmental questions raised in HSTO3003. This unit of study will promote hands on experience with different animal models, allowing students to observe and examine developing and differentiating tissues at the macroscopic and microscopic level. The main emphasis of this unit of study will concentrate on practical approaches to understanding the mechanisms that control animal development. Fertilization, cleavage, gastrulation and the formation of the primary germ layers are covered. The parts played by inductive cell and tissue interactions in differentiation, morphogenesis and pattern formation are examined at cellular and molecular levels. Note that for some weeks of the course, specialised practical classes will be carried out at the Westmead campus.
Textbooks
Gilbert SF. Developmental Biology. 8th edn. Sinauer Associates Inc: Sunderland, Mass. 2006.
NEUR3002 Neuroscience: Motor Systems & Behaviour

Credit points: 6 Teacher/Coordinator: Dr Vladimir Balcar Session: Semester 1 Classes: Two 1 hour lectures per week, one 3 hour practical per fortnight and one 3 hour tutorial per fortnight. Prerequisites: For BMedSc students: BMED(2801 or 2503) and BMED(2806 or 2505) For other students: (PHSI(2101 or 2001 or 2901 or 2005 or 2905) or ANAT(2003 or 2010)) and 6 credit points of MBLG. Prohibitions: PHSI3001, NEUR3902 Assumed knowledge: It is strongly recommended that students also take unit NEUR3001. ANAT2010 and PHSI2005 is assumed knowledge. Assessment: Two 1 hour exams, neuroanatomy practical test, prac report, paper discussion sessions, library essay.
The aim of this course is to provide students with an introduction to the structure and function of the nervous system. Our current knowledge of how the brain works is based on the analysis of the normal structure of the nervous system and its pathways, the functional effects of lesions and neurological diseases in different parts of the nervous system, and the way that nerve cells work at the molecular, cellular and integrative level. This course focuses on to the neural circuits and the mechanisms that control somatic and autonomic motor systems, motivated behaviours, emotions, and other higher order functions. The lecture series addresses the different topics, each of which offers special insight into the function of the nervous system in health and disease.
Textbooks
Kandel, Schwartz, Jessel. Principles of Neural Science. 4th Ed, Elsevier, NY, 2000 or Bear, Connors, Paradiso. Neuroscience: Exploring the brain. Baltimore: Williams & Wilkins, 2001
NEUR3902 Neuroscience: Motor Systems & Behav. Adv

Credit points: 6 Teacher/Coordinator: Dr Vladimir Balcar Session: Semester 1 Classes: Two 1 hour lectures per week, one 3 hour practical per fortnight and one 3 hour tutorial per fortnight. Advanced students may be exempt from attending some of these classes to permit meetings with supervisor. Prerequisites: For BMedSc students: Credit average in BMED(2801 or 2503) and BMED(2806 or 2505) For other students: Credit average in (PHSI(2101 or 2001 or 2901 or 2005 or 2905) or ANAT(2003 or 2010)) and 6 credit points of MBLG. Prohibitions: NEUR3002, PHSI3001 Assumed knowledge: ANAT2010 and PHSI2005 is assumed knowledge. Assessment: Two 1 hour exams, neuroanatomy practical test, prac report, paper discussion sessions, one research or review essay (research essay will replace some other assessment items from regular course).
Note: Permission from the coordinators is required for entry into this course. It is strongly recommended that students also take unit NEUR3001 or NEUR3901.
This unit of study is an extension of NEUR3002 for talented students with an interest in Neuroscience and research in this field. The lecture/practical component of the course is run in conjunction with NEUR3002. The aim of this course is to provide students with an introduction to the structure and function of the nervous system. Our current knowledge of how the brain works is based on the analysis of the normal structure of the nervous system and its pathways, the functional effects of lesions and neurological diseases in different parts of the nervous system, and the way that nerve cells work at the molecular, cellular and integrative level. This course focuses on to the neural circuits and the mechanisms that control somatic and autonomic motor systems, motivated behaviours, emotions, and other higher order functions. The lecture series addresses the different topics, each of which offers special insight into the function of the nervous system in health and disease.
Textbooks
Kandel, Schwartz, Jessel. Principles of Neural Science. 4th Ed, Elsevier, NY, 2000 or Bear, Connors, Paradiso. Neuroscience: Exploring the brain. Baltimore: Williams & Wilkins, 2001
NEUR3004 Integrative Neuroscience

Credit points: 6 Teacher/Coordinator: Dr Kevin Keay and Dr Catherine Leamey Session: Semester 2 Classes: One 0-1 hour lecture, one 2 hour tutorial plus 1-2 small meeting/laboratory per week. Prerequisites: For BMedSci: 42 credit points of intermediate BMed units. For others: 18 credit points of Intermediate science units of study from Anatomy & Histology, Biochemistry, Biology, Chemistry, Computer Science, Mathematics, Microbiology, Molecular Biology and Genetics, Physiology, Psychology or Statisitics. Prohibitions: NEUR3904, PHSI3002, PHSI3902 Assumed knowledge: Students should be familiar with the material in Bear, Connors & Paradiso Neuroscience: Exploring the Brain. Assessment: One 1 hour exam. Major essay/report. Tutorial participation.
Note: Enrolment in NEUR3003/3903 is HIGHLY RECOMMENDED. Courses are designed to be taken in conjunction with each other.
This second semester unit is designed to introduce students to "cutting edge" issues in the neurosciences and to be taken in conjunction with NEUR3003/3903. This course is a combination of small group lectures on current issues in neuroscience, seminar groups and a research-based laboratory or library project. Seminars will be held on topics including imaging pain, emotions, cortical development & plasticity, colour vision, stroke and hypertension, long-term regulation of blood pressure, auditory hallucinations and the "cocktail party effect".
Textbooks
Kandell, Schwartz and Jessell. Principles of Neural Science. 4th edition.
NEUR3904 Integrative Neuroscience (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Kevin Keay and Dr Catherine Leamey Session: Semester 2 Classes: One 1 hour lecture, one 2 hour tutorial and 1-2 hour small meeting/laboratory per week. Prerequisites: For BMedSCI: 42 credit points of intermediate BMed units. For others: 18 credit points of Intermediate science units of study from Anatomy & Histology, Biochemistry, Biology, Chemistry, Computer Science, Mathematics, Microbiology, Molecular Biology and Genetics, Physiology, Psychology or Statisitics. Plus, students must have a CREDIT (or better) in NEUR3001/3901 and NEUR3002/3902. Prohibitions: NEUR3004, PHSI3002, PHSI3902 Assumed knowledge: Students should be familiar with the material in Bear, Connors & Paradiso Neuroscience: Exploring the Brain. Assessment: One 1 hour exam. Major essay/report. Tutorial participation. Mini-Lecture.
Note: Department permission required for enrolment
Note: Enrollment in NEUR3003/3903 is HIGHLY RECOMMENDED. Courses are designed to be taken in conjunction with each other. Students must receive permission from the coordinators for enrollment.
This unit encompasses the material taught in NEUR3004. Advanced students prepare and present a mini-lecture on a current topic in neuroscience research.
Textbooks
Kandell, Schwartz and Jessell. Principles of Neural Science. 4th edition.
For other NEUR units of study, see the entry under the School of Physiology.

Anatomy and histology Honours and Graduate Diploma

Taking an Honours or Graduate Diploma provides the opportunity for students to do research on a project supervised by a member of staff. Assessment is based on a thesis summarising the results of the year's research, along with additional studies. To qualify for admission to Honours or the Graduate Diploma the student must obtain an appropriate standard in Senior Anatomy or Histology or Neuroscience.

Anatomy and Histology Higher Degrees

The award courses of Master of Science and Doctor of Philosophy by research are offered in the Faculty of Science by the Discipline of Anatomy and Histology.

Biochemistry

The discipline teaches Biochemistry and Molecular Biology to Science and Medical Science students at the Junior, Intermediate and Senior levels. This discipline area includes the fundamental principles governing the structure, function and interactions of biological molecules, the nature of genetic material and control of its expression and leads to an understanding of the molecular nature of living systems.

Junior program

The Junior program has the introductory faculty Unit of Study Molecular Biology & Genetics Intro (MBLG1001).

Intermediate program

The comprehensive Intermediate program in Biochemistry and Molecular Biology includes Protein Biochemistry (BCHM2071/2971), Human Biochemistry (BCHM2072/2972) and the faculty Unit of Study Molecular Biology & Genetics A (MBLG2071/2971). Students wishing to progress to the Senior units of study in Biochemistry and Molecular Biology need to have completed MBLG1001 and 12 CP of Intermediate BCHM/MBLG Units of Study.

Senior program

The Senior program consists of Molecular Biology & Biochemistry - Genes (BCHM3071/3971), Molecular Biology & Biochemistry - Protein (BCHM3081/3981), Human Molecular Cell Biology (BCHM3072/3972), Medical and Metabolic Biochemistry, (BCHM3082/3982), Proteomics and Functional Genomics (BCHM3092/3992). Any four of these units of study constitute a major in Biochemistry. Students seeking further information should consult the relevant Tables in earlier Undergraduate Enrolment Advice chapters.
BCHM2071 Protein Biochemistry

Credit points: 6 Teacher/Coordinator: A/Prof Charles Collyer Session: Semester 1 Classes: Two 2 hour lectures per week, one 1 hour tutorial and one 4 hour practical per fortnight. Prerequisites: 12 credit points of Junior Chemistry plus MBLG (1001 or 1901) Corequisites: Recommended concurrent units of study: intermediate MBLG and BCHM for progression to Senior Biochemistry. Prohibitions: BCHM2011, BCHM2971 Assumed knowledge: CHEM (1101 and 1102) Assessment: One 2 hour theory and theory of practical exam, online quizzes, practical assignments and laboratory book reports.
This unit of study introduces biochemistry by describing the physical and chemical activities of proteins and their functions in cells. The details of protein interactions with other cellular components are presented and the relationship of protein structure and function is discussed. Techniques in protein chemistry and analysis, including proteomics are introduced together with key experiments which reveal the physical basis of the functioning of proteins. This course builds on the protein science presented in MBLG1001 and is ideally suited to students studying intermediate Chemistry together with Biochemistry. The practical course will nurture technical skills in biochemistry and will include protein preparation, the analysis of protein structure and enzymatic assays.
Textbooks
Pratt, CW & Cornely, K. Essential Biochemistry. John Wiley & Sons. 2004. and the
BCHM2971 Protein Biochemistry (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Charles Collyer Session: Semester 1 Classes: Two 1 hour lectures per week, one 1 hour tutorial and one 4 hour practical per fortnight. Prerequisites: 12 credit points of Junior Chemistry and Distinction in MBLG1001 or MBLG1901 Prohibitions: BCHM2011, BCHM2071 Assessment: One 2 hour theory and theory of practical exam, online quizzes, practical assignments and laboratory book reports.
This advanced unit of study introduces biochemistry by describing the physical and chemical activities of proteins and their functions in cells. The details of protein interactions with other cellular components are presented and the relationship of protein structure and function is discussed. Techniques in protein chemistry and analysis, including proteomics are discussed together with key experiments which reveal the physical basis of the functioning of proteins. This course builds on the protein science presented in MBLG1001 and is ideally suited to students studying Intermediate Chemistry together with Biochemistry. The advanced practical course will nurture technical skills in protein biochemistry and will include protein preparation, the interpretation of protein structure, enzymatic assays and biochemical analysis.
Textbooks
Pratt, CW & Cornely, K. Essential Biochemistry. John Wiley & Sons. 2004. and the
BCHM2072 Human Biochemistry

Credit points: 6 Teacher/Coordinator: A/Prof Gareth Denyer Session: Semester 2 Classes: 2 lectures per week, 1 tutorial per fortnight, and one 4hr practical per fortnight Prerequisites: Either MBLG (1001 or 1901) and 12 credit points of Junior Chemistry or either MBLG2071 or MBLG2971 Prohibitions: BCHM2972, BCHM2002, BCHM2102, BCHM2902, BCHM2112 Assessment: One 3 hour exam, practical reports
This unit of study aims to describe how cells work at the molecular level, with special emphasis on human biochemistry. The chemical reactions which occur inside cells are described in the first series of lectures, Cellular Metabolism. Aspects of the molecular architecture of cells which enable them to transduce messages and communicate are described in the second half of the unit of study. At every stage there is emphasis on the 'whole body' consequences of reactions, pathways and processes at the cellular level. Cellular Metabolism describes how cells extract energy from fuel molecules like fatty acids and carbohydrates, how the body controls the rate of fuel utilization and how the mix of fuels is regulated (especially under different physiological circumstances such as starvation and exercise). The metabolic inter-relationships of the muscle, brain, adipose tissue and liver and the role of hormones in coordinating tissue metabolic relationships is discussed. The unit also discusses how the body lays down and stores vital fuel reserves such as fat and glycogen, how hormones modulate fuel partitioning between tissues and the strategies involved in digestion and absorption and transport of nutrients. Signal Transduction covers how communication across membranes occurs (i.e. via surface receptors and signaling cascades). This allows detailed molecular discussion of the mechanism of hormone action and intracellular process targeting. The practical component complements the lectures by exposing students to experiments which investigate the measurement of glucose utilisation using radioactive tracers and the design of biochemical assay systems. During the unit of study, generic skills will be nurtured by frequent use of computers and problem solving activities. However student exposure to generic skills will be extended by the introduction of exercises designed to teach oral communication, instruction writing and feedback articulation skills.
BCHM2972 Human Biochemistry (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Gareth Denyer Session: Semester 2 Classes: 2 lectures per week, 1 tutorial per fortnight, and one 4hr practical per fortnight Prerequisites: Distinction in one of (BCHM (2071 or 2971) or MBLG(2071 or 2971)) or (Distinction in MBLG (1001 or 1901) and Distinction average in all other Junior Science Units of Study undertaken). Prohibitions: BCHM2072, BCHM2002, BCHM2102, BCHM2902, BCHM2112 Assessment: One 3 hour exam, practical reports
This advanced unit aims to describe how cells work at the molecular level, with special emphasis on human biochemistry. The chemical reactions which occur inside cells are described in the first series of lectures, Cellular Metabolism. Aspects of the molecular architecture of cells which enable them to transduce messages and communicate are described in the second half of the unit of study. At every stage there is emphasis on the 'whole body' consequences of reactions, pathways and processes at the cellular level. Cellular Metabolism describes how cells extract energy from fuel molecules like fatty acids and carbohydrates, how the body controls the rate of fuel utilization and how the mix of fuels is regulated (especially under different physiological circumstances such as starvation and exercise). The metabolic inter-relationships of the muscle, brain, adipose tissue and liver and the role of hormones in coordinating tissue metabolic relationships is discussed. The unit also discusses how the body lays down and stores vital fuel reserves such as fat and glycogen, how hormones modulate fuel partitioning between tissues and the strategies involved in digestion and absorption and transport of nutrients. Signal Transduction covers how communication across membranes occurs (i.e., via surface receptors and signaling cascades). This allows detailed molecular discussion of the mechanism of hormone action and intracellular process targeting. The practical component complements the lectures by exposing students to experiments which investigate the measurement of glucose utilisation using radioactive tracers and the design of biochemical assay systems. During the unit of study, generic skills will be nurtured by frequent use of computers and problem solving activities. However, student exposure to generic skills will be extended by the introduction of exercise designed to teach oral communication, instruction writing and feedback articulation skills.
BCHM3071 Molecular Biology & Biochemistry- Genes

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Merlin Crossley. Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3971, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, prac work.
This unit of study is designed to provide a comprehensive coverage of the activity of genes in living organisms, with a focus on eukaryotic and particularly human systems. The lecture component covers the arrangement and structure of genes, how genes are expressed, promoter activity and enhancer action. This leads into discussions on the biochemical basis of differentiation of eukaryotic cells, the molecular basis of imprinting, epigenetics, and the role of RNA in gene expression. Additionally, the course discusses the effects of damage to the genome and mechanisms of DNA repair. The modern techniques for manipulating and analysing macromolecules such as DNA and proteins and their relevance to medical and biotechnological applications are discussed. Techniques such as the generation of gene knockout and transgenic mice are discussed as well as genomic methods of analysing gene expression patterns. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of genes within the human genome. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology laboratories.
Textbooks
Lewin, B. Essential Genes. Prentice-Hall. 2006.
BCHM3971 Molecular Biology & Biochem- Genes (Adv)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Merlin Crossley Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3071, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, prac work.
This unit of study is designed to provide a comprehensive coverage of the activity of genes in living organisms, with a focus on eukaryotic and particularly human systems. The lecture component covers the arrangement and structure of genes, how genes are expressed, promoter activity and enhancer action. This leads into discussions on the biochemical basis of differentiation of eukaryotic cells, the molecular basis of imprinting, epigenetics, and the role of RNA in gene expression. Additionally, the course discusses the effects of damage to the genome and mechanisms of DNA repair. The modern techniques for manipulating and analysing macromolecules such as DNA and proteins and their relevance to medical and biotechnological applications are discussed. Techniques such as the generation of gene knockout and transgenic mice are discussed as well as genomic methods of analysing gene expression patterns. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of genes within the human genome. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology laboratories. The lecture component of this unit of study is the same as BCHM3071. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.
Textbooks
Lewin, B. Essential Genes. Prentice-Hall. 2006.
BCHM3081 Mol Biology & Biochemistry- Proteins

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Dr Simon Easterbrook-Smith Session: Semester 1 Classes: Two 2 hour lectures week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3981, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, prac work.
This unit of study is designed to provide a comprehensive coverage of the functions of proteins in living organisms, with a focus on eukaryotic and particularly human systems. Its lecture component deals with how proteins adopt their biologically active forms, including discussions of protein structure, protein folding and how recombinant DNA technology can be used to design novel proteins with potential medical or biotechnology applications. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of proteins. It also covers physiologically and medically important aspects of proteins in living systems, including the roles of chaperones in protein folding inside cells, the pathological consequences of misfolding of proteins, how proteins are sorted to different cellular compartments and how the biological activities of proteins can be controlled by regulated protein degradation. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology and protein biochemistry laboratories.
Textbooks
Lesk, A. Introduction to Protein Science. Oxford University Press. 2004.
BCHM3981 Mol Biology & Biochemistry- Proteins Adv

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Dr Simon Easterbrook-Smith Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3081, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, prac work.
This unit of study is designed to provide a comprehensive coverage of the functions of proteins in living organisms, with a focus on eukaryotic and particularly human systems. Its lecture component deals with how proteins adopt their biologically active forms, including discussions of protein structure, protein folding and how recombinant DNA technology can be used to design novel proteins with potential medical or biotechnology applications. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of proteins. It also covers physiologically and medically important aspects of proteins in living systems, including the roles of chaperones in protein folding inside cells, the pathological consequences of misfolding of proteins, how proteins are sorted to different cellular compartments and how the biological activities of proteins can be controlled by regulated protein degradation. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology and protein biochemistry laboratories. The lecture component of this unit of study is the same as BCHM3081. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.
Textbooks
Lesk, A. Introduction to Protein Science. Oxford University Press. 2004.
BCHM3072 Human Molecular Cell Biology

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Iain Campbell Session: Semester 2 Classes: One 2 hour lecture per week and one 6 hour practical per fortnight. Prerequisites: (MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/MBLG2971or BCHM2071/2971 or BCHM2072/2972)) or (42CP of Intermediate BMedSc units, including BMED2802 and BMED2804) Prohibitions: BCHM3972, BCHM3002, BCHM3902, BCHM3004, BCHM3904 Assessment: One 2.5 hour exam, prac work.
This unit of study will explore the responses of cells to changes in their environment in both health and disease. The lecture course consists of four integrated modules. The first will provide an overview of the role of signalling mechanisms in the control of human cell biology and then focus on cell surface receptors and the downstream signal transduction events that they initiate. The second will examine how cells detect and respond to pathogenic molecular patterns displayed by infectious agents and injured cells by discussing the roles of relevant cell surface receptors, cytokines and signal transduction pathways. The third and fourth will focus on the life, death and differentiation of human cells in response to intra-cellular and extra-cellular signals by discussing the eukaryotic cell cycle under normal and pathological circumstances and programmed cell death in response to abnormal extra-cellular and intra-cellular signals. In all modules emphasis will be placed on the molecular processes involved in human cell biology, how modern molecular and cell biology methods have led to our current understanding of them and the implications of them for pathologies such as cancer. The practical component is designed to complement the lecture course, providing students with experience in a wide range of techniques used in modern molecular cell biology.
Textbooks
Alberts, B. et al. Molecular biology of the cell. 4th edition. Garland Science. 2002.
BCHM3972 Human Molecular Cell Biology (Advanced)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Iain Campbell Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/MBLG2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Corequisites: MBLG3999 Prohibitions: BCHM3072, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, prac work.
This unit of study will explore the responses of cells to changes in their environment in both health and disease. The lecture course consists of four integrated modules. The first will provide an overview of the role of signalling mechanisms in the control of human cell biology and then focus on cell surface receptors and the downstream signal transduction events that they initiate. The second will examine how cells detect and respond to pathogenic molecular patterns displayed by infectious agents and injured cells by discussing the roles of relevant cell surface receptors, cytokines and signal transduction pathways. The third and fourth will focus on the life, death and differentiation of human cells in response to intra-cellular and extra-cellular signals by discussing the eukaryotic cell cycle under normal and pathological circumstances and programmed cell death in response to abnormal extra-cellular and intra-cellular signals. In all modules emphasis will be placed on the molecular processes involved in human cell biology, how modern molecular and cell biology methods have led to our current understanding of them and the implications of them for pathologies such as cancer. The practical component is designed to complement the lecture course, providing students with experience in a wide range of techniques used in modern molecular cell biology. The lecture component of this unit of study is the same as BCHM3072. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.
Textbooks
Alberts, B. et al. Molecular biology of the cell. 4th edition. Garland Science. 2002.
BCHM3082 Medical and Metabolic Biochemistry

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Philip Kuchel Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3982, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, prac work.
This unit of study will explore the biochemical processes involved in the operation of cells and how they are integrated in tissues and in the whole human body in normal and diseased states. These concepts will be illustrated by considering whole-body aspects of energy utilisation, fat and glycogen storage and their regulation under normal conditions compared to obesity and diabetes. Key concepts that will be discussed include energy balance, regulation of metabolic rate, control of food intake, tissue interactions in fuel selection, the role of adipose tissue and transport of fuel molecules from storage organs and into cells. Particular emphasis will be placed on how the modern concepts of metabolomics, coupled with new methods, including magnetic resonance techniques, molecular biology methods and microarray technologies, as well as studies of the structure and function of enzymes, have led to our current understanding of how metabolic processes are normally integrated and how they become deranged in disease states. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in modern medical and metabolic biochemistry.
BCHM3982 Medical and Metabolic Biochemistry (Adv)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Philip Kuchel Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3082, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, prac work.
This unit of study will explore the biochemical processes involved in the operation of cells and how they are integrated in tissues and in the whole human body in normal and diseased states. These concepts will be illustrated by considering whole-body aspects of energy utilisation, fat and glycogen storage and their regulation under normal conditions compared to obesity and diabetes. Key concepts that will be discussed include energy balance, regulation of metabolic rate, control of food intake, tissue interactions in fuel selection, the role of adipose tissue and transport of fuel molecules from storage organs and into cells. Particular emphasis will be placed on how the modern concepts of metabolomics, coupled with new methods, including magnetic resonance techniques, molecular biology methods and microarray technologies, as well as studies of the structure and function of enzymes, have led to our current understanding of how metabolic processes are normally integrated and how they become deranged in disease states. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in modern medical and metabolic biochemistry. The lecture component of this unit of study is the same as BCHM3082. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.
BCHM3092 Proteomics and Functional Genomics

Credit points: 6 Teacher/Coordinator: Dr Stuart Cordwell, Mrs Jill Johnston Session: Semester 2 Classes: Two 1 hour lectures per week and one 3 hour practical per week. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3992, BCHM3098 Assessment: One 2.5 hour exam, prac work.
This unit of study will focus on the high throughput methods for the analysis of gene structure and function (genomics) and the analysis of proteins (proteomics), which are at the forefront of discovery in the biomedical sciences. The course will concentrate on the hierarchy of gene-protein-structure-function through an examination of modern technologies built on the concepts of genomics versus molecular biology, and proteomics versus biochemistry. Technologies to be examined include DNA sequencing, nucleic acid and protein microarrays, two-dimensional gel electrophoresis of proteins, uses of mass spectrometry for high throughput protein identification, isotope tagging for quantitative proteomics, high-performance liquid chromatography, high-throughput functional assays, affinity chromatography and modern methods for database analysis. Particular emphasis will be placed on how these technologies can provide insight into the molecular basis of changes in cellular function under both physiological and pathological conditions as well as how they can be applied to biotechnology for the discovery of biomarkers, diagnostics, and therapeutics. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in proteomics and genomics.
Textbooks
Liebler, DC. Introduction to proteomics : tools for the new biology. Humana Press. 2002.
BCHM3992 Proteomics and Functional Genomics (Adv)

Credit points: 6 Teacher/Coordinator: Dr Stuart Cordwell, Mrs Jill Johnston Session: Semester 2 Classes: Two 1 hour lectures per week and one 3 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3092, BCHM3098 Assessment: One 2.5 hour exam, prac work.
This unit of study will focus on the high throughput methods for the analysis of gene structure and function (genomics) and the analysis of proteins (proteomics) which are at the forefront of discovery in the biomedical sciences. The course will concentrate on the hierarchy of gene-protein-structure-function through an examination of modern technologies built on the concepts of genomics versus molecular biology, and proteomics versus biochemistry. Technologies to be examined include DNA sequencing, nucleic acid and protein microarrays, two-dimensional gel electrophoresis of proteins, uses of mass spectrometry for high throughput protein identification, isotope tagging for quantitative proteomics, high-performance liquid chromatography, high-throughput functional assays, affinity chromatography and modern methods for database analysis. Particular emphasis will be placed on how these technologies can provide insight into the molecular basis of changes in cellular function under both physiological and pathological conditions as well as how they can be applied to biotechnology for the discovery of biomarkers, diagnostics, and therapeutics. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in proteomics and genomics. The lecture component of this unit of study is the same as BCHM3092. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.