7. Science units of study

This chapter provides information on each of the undergraduate units of study offered by the Faculty of Science, as well as additional information on each of the teaching Schools and Departments and interdisciplinary subject areas.

Organisation of unit of study information

The units of study are generally organised alphabetically by School or Departments. EMHU and HSTO units can be found under the entry for Anatomy and Histology. NEUR can be found in the Anatomy or Physiology entries, depending on the principle teaching department for the individual unit. COMP, INFO, ISYS, NETS, MULT AND SOFT can be found under the Information Technologies entry. Further information on Information Technology units can be found in the Faculty of Engineering and Information Technologies Handbook and website. NTMP can be found under the Marine Science entry. STAT can be found under the Mathematics and Statistics entry. VIRO can be found under the Microbiology entry.

Aerospace, Mechanical and Mechatronic Engineering

The School of Aerospace, Mechanical and Mechatronic Engineering is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in aerospace, mechanical, biomedical and mechatronic engineering, units of study in the School are available to students in the Faculty of Science who meet any prerequisite requirements for a particular unit.

Registration

Timetable information on alternative lecture/tutorial/laboratory/practical classes is available in the General Office of the School.

Tutorials and laboratories

All students are required to undertake the tutorial and laboratory work associated with the chosen units of study, details of which are provided in the timetables. The experimental and tutorial work, an integral part of the unit of study, complements the lecture material.

Double degree

Science graduates may obtain up to two years advanced standing towards a Bachelor of Engineering degree in Aerospace, Mechanical, Mechatronic or Biomedical Engineering. Students wishing to undertake this option must apply through UAC and compete on the basis of academic merit. Information about application procedures is available from the Engineering Faculty Office in the Engineering and Information Technologies Building.

Agricultural Chemistry and Soil Science

Study in the discipline of Agricultural Chemistry is offered by the Faculty of Agriculture, Food and Natural Resources. Units of study in Agricultural Chemistry for Science students cover aspects of chemistry and biochemistry which are relevant in basic and applied biological sciences including agriculture, the environment and food science. The unit of study, Introductory Rural Environmental Chemistry (AGCH2003) introduces students to basic analytical and environmental chemistry. Senior units of study include Chemistry and Biochemistry of Foods A and B (AGCH3025 and AGCH3026) and Land and Water Ecochemistry (AGCH3032). These senior units of study introduce students to the applied aspects of food chemistry science or to applied environmental chemistry. Emphasis is placed on the chemistry of both naturally occurring molecules of biological, agricultural and environmental significance (eg in foods and natural fibres), and chemically synthesised (eg insecticides and herbicides). Agricultural Chemistry Honours is available to students who wish to further their studies in food chemistry or environmental chemistry.

AGCH2003 Rural Environmental Chemistry

Credit points: 6 Teacher/Coordinator: Dr Robert Caldwell Session: Semester 1 Classes: 3 lec/week and 30 hours of lab/semester Prerequisites: 12 credit points of Junior Chemistry Prohibitions: AGCH2001, AGCH2002 and CHEM2404 Assessment: One 2 hr exam, laboratory reports, theory of prac test, lecture quiz.

This introductory unit of study consists of aspects of chemistry relevant in studies of basic and applied biological sciences including agriculture, food and the rural environment. Lecture topics include an introduction to quantitative aspects of biophysical, environmental and aquatic chemistry with particular reference to protocols for specimen sampling and maintenance of specimen quality; the principles of basic analytical methods such as spectroscopy, chromatography and electrochemistry; environmental aspects of water such as thermal properties and its behaviour as a solvent of hydrophobic solutes, surfactants, neutral hydrophilic solutes, salts and other electrolytes, and gases. The lectures will also include environmental nutrient cycling (C, N, S, O, P, micronutrients) with reference to pesticides, herbicides, organic and inorganic pollutants affecting agricultural produce and the environment, and gases of environmental concern. Ten laboratory sessions will demonstrate aspects of analytical chemistry including: elemental analysis of foods and natural waters, spectrophotometry, chromatographic techniques, preparation of buffers, fundamentals of pH and conductance measurement, water as a solvent including the effect of surfactants and electrolytes. Students will analyze natural water samples using the skills acquired in earlier laboratory sessions and write an environmental assessment from their findings. An on-line tutorial on safety procedures in a chemistry laboratory is a pre-requisite for commencement of laboratory experiments.

AGCH3025 Chemistry and Biochemistry of Foods

Credit points: 6 Teacher/Coordinator: Dr Meredith Wilkes, Dr Robert Caldwell, Prof Les Copeland, A/Prof Neil Howes Session: Semester 1 Classes: 3 lec/wk; 21 hrs laboratory Prerequisites: 6 credit points of Intermediate units in either Agricultural Chemistry or Chemistry or PLNT2001 or PLNT2901 or BCHM2071 or BCHM2072 Prohibitions: AFNR5102 Assumed knowledge: 12 credit points of Junior chemistry Assessment: One 2 hr theory exam, one 1 hr theory of prac exam, practical reports, lecture quizzes.

This unit of study aims to give students an understanding of the properties, relationship between form and function and fitness for purpose (quality) of food components, and the interactions between these components during storage, processing and digestion.
The unit will develop an understanding of the role of agricultural products as foods. Students will gain an appreciation of the biochemical systems we know as foods and will build upon knowledge gained in intermediate levels of biochemistry.
Students will explore the relationship between chemical composition and structure of macro- and micro-constituents and their function in foods. Students will also develop an analytical approach in understanding of the biochemistry of food formulations, processing and storage stability.
At the completion of this unit, students will be able to describe the chemistry, biochemistry and processing behaviour of major food constituents such as carbohydrates, proteins, lipids, natural fibres and gel-forming polymers. They will also be able to demonstrate an understanding of the functionality of these constituents and gain experience in laboratory techniques used in industry for the analysis of some of these compounds in actual food products.
Students will gain research and inquiry skills by mastering the key theories and concepts presented in lecture material and practical classes. Students will also gain information literacy and communication skills by using various sources of information for the synthesis of material required for practical reports. At the end of the unit students should also have an enhanced understanding of the role of agriculture in Australian and International food production systems.

Textbooks

There is no recommended textbook. Laboratory notes will be available for purchase from the Copy Centre in the first week of semester and lecture notes will be made available through WebCT.

AGCH3026 Food Biotechnology

Credit points: 6 Teacher/Coordinator: Dr Meredith Wilkes, Dr Robert Caldwell, Prof Les Copeland, A/Prof Neil Howes Session: Semester 1 Classes: 3 lec/wk and 21 hrs laboratory Prerequisites: 6 credit points of Intermediate Agricultural Chemistry or PLNT2001 or PLNT2901 or BCHM2071 or BCHM2072 Corequisites: AGCH3025 Prohibitions: AFNR5103 Assumed knowledge: 12 units of Junior chemistry Assessment: One 2 hr exam, practical reports, theory of practical exam, oral and written presentation on a case study.

This unit aims to give students an understanding of the biochemistry of processing of raw products used in food manufacture, with special emphasis placed on current issues faced by the food industry.
The unit is designed to build upon intermediate levels of chemistry and biochemistry by developing a deeper understanding of how biochemical molecules contained in raw products affect the processing, manufacture and quality of foods. It complements AGCH3025 by applying the knowledge gained in that unit in food processing procedures.
The teaching covers the use of enzymes in food processing and diagnostic analysis, the types of raw products used in foods and their processing, the chemistry of raw products with special attention given to proteins, doughs and baking technologies, the reactions that occur during processing and the evaluation of foods. Students will gain exposure to a wide range of food related issues through the presentation of lectures by invited speakers with industry experience.
At the end of this unit students will understand the chemistry of doughs and the changes that occur in baked goods, the role of enzymes in the food industry and the processing of raw ingredients and the products produced. Students will also have an enhanced understanding of issues that face Australian and international agricultural practices and current issues presented by an increasingly global food processing industry.
Students will gain research and inquiry skills by mastering the key theories and concepts presented in lecture material and practical classes. Students will also gain information literacy and communication skills by using various sources of information for the synthesis of material required for practical reports and an oral presentation. At the end of the unit students should also have an enhanced understanding of the role of agriculture in Australian and international food production systems.

Textbooks

No recommended text. Laboratory notes will be available for purchase from the Copy Centre in the first week of semester and lecture notes will be available through the unit WebCT site.

AGCH3032 Land and Water Ecochemistry

Credit points: 6 Teacher/Coordinator: Professor Ivan Kennedy, Dr Robert Caldwell Session: Semester 2 Classes: 5-day field trip in AVCC common break; 20 hr lectures/tutorials, 25 hr laboratory classes and project during semester Prerequisites: AGCH2003 or AGCH2004 or PLNT2001 or CHEM24XX or BCHM2XXX or ENVI2001 Prohibitions: AGCH3030, AGCH3031 Assessment: One 2 hr exam, field trip report and presentation, prac and project reports.

This field-oriented unit will develop professional expertise in rural ecochemistry, measuring impacts on sustainability and seeking solutions to chemical problems at the catchment scale. AGCH3032 is an elective unit suitable for the BSc, BScAgr, BLWSc, BHortSc, BResEc and BAnVetBioSc degrees, building on intermediate units in chemistry or biochemistry. It will promote knowledge and professional skills related to key chemical processes in ecosystems causing risks to soil and water resources, the quality of agricultural produce and to ecological biodiversity. These will be examined by quantitative risk analysis, targeted monitoring and remediation, seeking innovative solutions (e.g. IPM and genetic modification).
A field trip in the AVCC break and professional report on a chosen topic will investigate relevant case studies at selected centres in eastern Australian doing innovative research on global warming and climate change, soil and water quality and environmental protection. Lectures will provide knowledge in the environmental C, N and S cycles important for sustaining action in ecosystems, the nature of greenhouse gases and mitigation of their production including C sequestration, risks to biota (soil, water, plants, animals) from acidification and innovative means of remediation, environmental risk from pesticides and other pollutants, monitoring and their remediation. In laboratory exercises, students will gain skills in relevant analyses using GC, LC, mass spectrometry and ELISA. The assessment procedures are designed to provide students with skills in definition of research problems and risk assessment, quality in analyses, risk management and remediation, and effective communication of outputs.

Agricultural Chemistry Honours

Honours in Agricultural Chemistry aims to provide students with problem-solving and communication skills required by professional chemists in enterprises concerned with agricultural production and processing, foods and beverages, and environmental science; enable students to learn to work independently in a laboratory environment; familiarise students with the research literature and methodology of biological chemistry; and provide a basis for students who wish to proceed to postgraduate research. Candidates should consult the department as soon as possible after results in senior units of study are obtained. The unit of study consists of a research project and four 6 credit point units of study. The research project component includes oral as well as written forms of assessment. Projects are usually available in one of the following areas of current research interest in the department: carbohydrate and nitrogen metabolism in plants, biological nitrogen fixation and biofertilisers, greenhouse gas production, the biochemistry and environmental chemistry of pesticides and herbicides, environmental risk assessment, acidification of ecosystems, residue analysis in foods, aspects of food science including oil seed and cereal chemistry and biochemistry.

Soil Science

The Soil Science units of study aim primarily at giving students an introduction to the three major branches of soil science, namely soil physics, soil chemistry, and pedology, and at providing the basis for a professional career in each of these divisions for students wishing to specialise. The introductory unit of study is particularly relevant for students interested in the environmental and geological sciences and in land-use management. For a major in Soil Science, the minimum requirement is completion of SOIL3008, 3009 and 3010 and one of (AGCH3032 or LWSC3006 or PPAT4005).

SOIL2003 Soil Properties and Processes

Credit points: 6 Teacher/Coordinator: A/Prof Balwant Singh (Coordinator), Prof Alex McBratney, Dr Stephen Cattle Session: Semester 1 Classes: (3 lec & 3hr prac)/wk Assessment: Prac book and fieldtrip report (15%), 3 Quizzes (15%), essay (5%), practical exam (25%), written exam (40%).

This unit of study is designed to introduce students to the fundamental concepts within pedology, soil physics and soil chemistry. These concepts are part of the grounding principles that underpin crop and animal production, nutrient and water cycling, and environmental sustainability taught by other units of study in the Faculty. Students will participate in a two-day field excursion in the first week of semester to examine some common soils of the Sydney Basin, they will also learn to describe soil, and measure soil chemical and physical properties in the field. Referring to common soil profiles of the Sydney Basin, students will concentrate on factors affecting soil formation, the rudiments of soil description, and analysis of soil properties that are used in soil classification. Students will also develop knowledge of the physics of water and gas movement, soil strength, soil chemical properties, inorganic and organic components, nutrient cycles and soil acidity in an agricultural context. At the end of this unit students will become familiar with the factors that determine a soil's composition and behaviour, and will have an understanding of the most important soil physical and chemical properties. Students will develop communication skills through essay, report and practical exercises. The final report and laboratory exercise questions are designed to develop team work and collaborative efforts.

Textbooks

Campbell, K.O. & Bowyer, J.W. (eds) (1988). The Scientific Basis of Modern Agriculture. Sydney University Press.

SOIL2004 The Soil Resource

Credit points: 6 Teacher/Coordinator: Dr Stephen Cattle (Coordinator), Prof Alex McBratney, A/Prof Balwant Singh Session: Semester 2 Classes: (2 lec, 2 pracs)/wk, 24 hr (5 days) field work out of semester time Assessment: Literature review exercise (10%), soil description and mapping report (20%), laboratory report (15%), 2 hr exam (50%), field excursion participation (5%)

This unit will familiarize students with the description and mapping of soil types in the Australian landscape, with common analytical methods for soil and with the various forms of degradation that may alter the quality and function of soil. It is an applied soil science unit which builds on the fundamental soil science concepts learned in the SOIL2003 unit. The first practical component of the unit, a five-day soil survey, will give students experience in soil description and classification in the field, and soil samples collected during this survey will be subsequently analysed for a variety of attributes by the students in laboratory practicals. In the lecture series, topics including soil type distribution, soil quality, soil function, soil fertility and soil degradation will be discussed and linked to practical sessions. By the end of this unit, students will be able to construct maps of soil properties and soil type distribution, describe primary soil functions, soil attributes and types of soil degradation in an agricultural context, and be able to recognize and communicate the ability of a soil profile to sustain plant growth. Students will gain research and inquiry skills by collecting, analyzing and interpreting soil survey data. They will improve their information literacy skills by carrying out a literature review exercise, and will gain communication skills by having to prepare and present a poster.

Textbooks

Brady NC & Weil RR. (2002) The Nature and Properties of Soils. 13th ed. (or any later edition) Prentice Hall, New Jersey.

SOIL3008 Rural Spatial Information Systems

This unit of study is not available in 2009

Credit points: 6 Teacher/Coordinator: Dr I Odeh Session: Semester 1 Classes: (2 lec, 2hr prac)/wk, four-day field trip Assessment: One 15 min presentation (10%), 3500w prac report (35%), 1500w report on field excur (15%), one 2 hr exam (40 %)

This unit is designed to impart knowledge and skills in spatial analysis and geographical information science (GISc) for decision-making in rural context. The unit of study is intended to introduce students to modern geospatial analysis and GISc technologies. It is offered as a core unit for BLWSc students and as an elective for BScAgr, BHortSc, BSc and BResEc students. The lecture material will present several themes: principles of GISc, fundamentals of remote sensing and geo-image analysis, geospatial data sources and acquisition methods, processing of geospatial data and spatial statistics. Practical exercises will focus on learning geographical information systems (GIS) and how to apply them to land resource assessment, including digital terrain modelling, land-cover assessment, sub-catchment modelling, and soil quality assessment for decisions regarding sustainable land use and management. A 4 day field excursion during the mid-semester break will involve a day GPS fieldwork at Arthursleigh University farm and three days in Canberra visiting various government agencies which research and maintain GIS coverages of major rural environments. By the end of this UoS, students should be able to: differentiate between spatial data and spatial information; source geospatial data from government and private agencies; apply conceptual models of spatial phenomena for practical decision-making in rural context; apply critical analysis of situations to apply the concepts of spatial analysis to solving environmental and land resource problems; communicate effectively results of GIS and remote sensing investigations through various means- oral, written and essay formats; and use a major GIS software package such as ArcGIS

Textbooks

Burrough, P.A. and McDonnell, R.A. 1998. Principles of Geographic Information Systems. Oxford University Press: Oxford.

SOIL3009 Contemporary Field and Lab Soil Science

Credit points: 6 Teacher/Coordinator: Prof Alex McBratney (coordinator), A/Prof Balwant Singh, Dr Stephen Cattle, Dr Budiman Minasny Session: Semester 1 Classes: (2 lec, 2 prac)/wk, 6-day field excursion Prerequisites: SOIL2003 Assessment: One 2hr exam; pedology, soil physics and soil chemistry written assessments; group presentation, synthesis paper

This is a theoretical and empirical unit providing specialised training in three important areas of contemporary soil science, namely pedology, soil chemistry and soil physics. The key concepts of these sub-disciplines will be outlined and strengthened by hands-on training in essential field and laboratory techniques. All of this is synthesized by placing it in the context of soil distribution and use in North-Western New South Wales. The unit is motivated by the teaching team's research in this locale. It builds on students existing soil science knowledge gained in SOIL2003. After completion of the unit, students should be able to articulate the advantages and disadvantages of current field & laboratory techniques for gathering necessary soil information, and simultaneously recognise key concepts and principles that guide contemporary thought in soil science. Students will be able to synthesise soil information from a multiplicity of sources and have an appreciation of the cutting edge areas of soil research. By investigating the contemporary nature of key concepts, students will develop their skills in research and inquiry. Students will develop their communication skills through report writing and oral presentations and will also articulate an openness to new ways of thinking which augments intellectual autonomy. Teamwork and collaborative efforts are encouraged in this unit.

Textbooks

D. Hillel. 2004. Introduction to Environmental Soil Physics. Elsevier Science, San Diego, CA, USA

SOIL3010 The Soil at Work

Credit points: 6 Teacher/Coordinator: Prof Alex McBratney (coordinator) A/Prof Balwant Singh, Dr Stephen Cattle (facilitators) plus research-only academics Session: Semester 2 Classes: Problem-based unit: each student completes 2 problems; 4 x 3 hr workshops per problem (each student attends 8 workshops in total) Prerequisites: SOIL2003 or SOIL2004 Assessment: For each of two scenarios: Statement of the problem report (12.5%) - shared info, but two team reports; How to tackle problem seminar (12.5%) - team seminars, before fieldwork, analyses done; Results seminar (12.5%) - team seminars; Final report (12.5%) - individual work.

This is a problem-based applied soil science unit. It is designed to allow students to identify soil-related problems in the real-world and by working in a group and with an end-user to suggest short and long-term solutions to such problems. This is a core unit for students majoring or specializing in soil science and an elective unit for those wishing to gain an understanding of environmental problem-solving. It utilises and reinforces soil-science knowledge gained in SOIL2003 and/or SOIL2004 and problem-solving skills gained during the degree program. This unit will address real-world scenarios which involve soil-related problems such as carbon management, structural decline, acidification, salinisation and contamination. Students will gain some understanding of the concept of sustainability, and will be able to identify the causes of problems by reference to the literature, discussion with landusers and by the design and execution of key experiments and surveys. They will gain a focused knowledge of the key soil drivers to environmental problems and will have some understanding on the constraints surrounding potential solutions. By designing and administering strategies to tackle real-world soil issues students will develop their research and inquiry skills and enhance their intellectual autonomy. By producing reports and seminars that enables understanding by an end-user students will improve the breadth of their communication skills.

Textbooks

I.W.Heathcote 1997. Environmental Problem Solving: A Case Study Approach. McGraw-Hill, New York, NY, USA.

AGCH3032 Land and Water Ecochemistry

LWSC3006 Landscape Hydrology and Management

Credit points: 6 Teacher/Coordinator: Dr Willem Vervoort Session: Semester 1 Classes: (2 lec, 0.6 on-line 2.4 prac )hr/wk Prerequisites: LWSC2002 or GEOG2321 Corequisites: LWSC3004 Assessment: On-line activities 10%; oral presentation 10%; practical reports 50%; 2 hr exam 30%.

This unit of study is designed to allow students to examine catchment-scale hydrological modeling, groundwater hydrogeochemistry as an investigative tool for water quality and policy making at the catchment level.
It is a core unit for students in BLWSc and builds on the theoretical knowledge gained in LWSC3004, GEOG2321 and LWSC2002. In the first part, students will investigate several ways to simulate catchment hydrological processes and review the possibilities and impossibilities of using simulation models for catchment management. In the second part students will apply hydrogeochemical techniques to investigate groundwater quality and review recent developments in catchment-based management strategies to control salinity and pollution. At the end of this unit, students will be able to articulate advantages and disadvantages of using simulation models for catchment management, justify the choice of a simulation model for a particular catchment management problem, identify issues in relation to uncertainty, apply hydrogeochemical investigation techniques for groundwater and describe innovative strategies for salinity and pollution control. The students will gain research and inquiry skills through research based group projects, information literacy and communication skills through on-line discussion postings, laboratory reports and a presentation and personal and intellectual autonomy through working in groups.

PPAT4005 Soil Biology

Credit points: 6 Teacher/Coordinator: Prof David Guest Session: Semester 1 Classes: (2 tut, 3 hrs prac)/wk Prerequisites: MICR2024 or 6cp intermediate microbiology Assessment: Tutorial papers (30%), project proposal (10%), project report (50%), peer review (10%).

This unit investigates the diversity of organisms living in the soil, their biology, interactions and ecology, and their roles in maintaining and improving soil function. The unit is an elective for BScAgr, BHortSc and BSc students. It builds on the material introduced in MICR2024, PPAT3003 and BIOL3017. Undertaking this unit will develop skills in monitoring soil microbes, designing, conducting and analysing experiments. At the completion of this unit, students will be able to exercise problem-solving skills (developed through practical experiments, projects and tutorial discussions), think critically, and organise knowledge (from consideration of the lecture material and preparation of project reports), and expand from theoretical principles to practical explanations (through observing and reporting on project work). Students will consolidate their teamworking skills, develop self-directed study skills and plan effective work schedules, use statistical analysis in research, keep appropriate records of laboratory research, work safely in a research laboratory and operate a range of scientific equipment. Students will gain research and inquiry skills through group research projects, information literacy and communication skills through assessment tasks and personal and intellectual autonomy through working in groups.

Textbooks

Sylvia et al. 2005. Principles and Applications of Soil Microbiology 2nd ed. Pearson.

Soil Science Honours

The honours program consists of several parts: (i) supplementary lectures and seminars; (ii) topics of study selected from Agricultural Chemistry, Biometry, Botany, Geology, Physical Chemistry, Mathematics, Soil Mechanics, Soil Microbiology, etc; (iii) a small amount of field work performed under direction; and (iv) a project in one branch of soil science.

Anatomy and Histology

The Discipline of Anatomy and Histology teaches topographical and neuroanatomy, histology and cell biology, developmental biology and physical anthropology to students in the Faculties of Science, Medicine and Dentistry.

Location

The office is in the Anderson Stuart Building. The Discipline Office is on the first floor, Room S463.

Noticeboards

The noticeboards are situated near Room S463. Students are advised to consult the noticeboard regularly. Timetables for lectures and practical classes will be posted, where possible, in the week before the beginning of each semester.

Advice on units of study and enrolment

Students wishing to enrol in units of study in Anatomy and Histology must consult the Discipline advisers in the Enrolment Centre during re-enrolment week prior to enrolling in the units of study. Information will be available at this time on the units of study offered by the Discipline and on the advisability of various combinations of subjects.

Registration

All students should register with the Discipline. Please consult the Discipline's noticeboards for details.

Vaccinations

All students studying gross anatomy or neurosciences who may also be exposed to human tissues or fluids should contact the University Health Service regarding vaccinations.

Protective clothing

All students studying gross anatomy or neurosciences must wear a laboratory coat or gown in tutorial rooms and a gown in dissection rooms and must wear gloves when handling cadaveric material. Closed footwear must be worn in both tutorial rooms and dissection rooms.

Website

The Department's website is www.anatomy.usyd.edu.au.

ANAT2008 Principles of Histology

Credit points: 6 Teacher/Coordinator: Dr Laura Lindsay Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week; online and museum exercises (6 hours per week total) Prerequisites: 12 credit points of Junior Biology or Junior Psychology Prohibitions: ANAT2001 Assumed knowledge: General concepts in human biology Assessment: One 1 hour theory exam, one 1 hour practical exam, four quizzes

This unit of study covers the principles of cell biology and study of the structure of cells, tissues and organ systems at the light and electron microscopic levels. The focus is on human systems. Extension exercises introduce students to the connection between histology and anatomy. Modern practical applications of histological techniques and analysis for research are also presented.

Textbooks

Ross, MH and Paulina W. Histology-A Text and Atlas. 5th Edition, Lippincott Williams and Wilkins, New York. 2006

ANAT2009 Comparative Primate Anatomy

Credit points: 6 Teacher/Coordinator: Dr Denise Donlon Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week; museum project. Prerequisites: 12 credit points of Junior Biology or Junior Psychology or Junior Archaeology. Prohibitions: ANAT2002 Assumed knowledge: Knowledge of basic vertebrate biology Assessment: One 1 hour theory exam, one 30 min prac exam, two quizzes, one 2000 word essay

This unit of student covers the musculo-skeletal anatomy of the human body with particular emphasis on human evolution and comparisons with apes and fossil hominids. The topics covered include the versatility of the human hand, in manipulation and locomotion, bipedalism, climbing and brachiation in apes, and the change in pelvic anatomy associated with bipedalism and obstetric consequences.

Textbooks

Kapit, W and Elson, LM The Anatomy Coloring Book. Addison-Wesley. 2001

ANAT2010 Concepts of Neuroanatomy

Credit points: 6 Teacher/Coordinator: Dr Karen Cullen Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: BIOL (1003 or 1903) and one of: ANAT2008 or BIOL (1002 or 1902) or MBLG(1001 or 1901 or 2071 or 2971) or PSYC (1001 and 1002). Students must have a grade of credit in at least one of the prerequisite units. Prohibitions: ANAT2003 Assumed knowledge: Background in basic cell biology and basic mammalian biology. Assessment: One 1.5 hour theory exam, one 1 hour practical exam, 2000 word essay, practical reports

Students are introduced to the structure and organisation of the central and peripheral nervous system. The course begins with an exploration into the make-up of the individual cells, followed by an examination of the different regions of the nervous system. A final theme of the course touches on the organisation of various systems (sensory and motor), together with aspects of higher-order function (memory). In essence, the course covers general concepts of organisation, structure and function of the brain and its different areas. The practicals offer students the unique opportunity to examine specimens in the Anatomy labs and museum. This course will be of considerable interest to students studying science and related disciplines, as well as those wishing to pursue further study in Neuroscience at senior levels.

Textbooks

Bear, MF, Connors, BW and Paradiso, MA. Neuroscience: Exploring the Brain. Third edition. Williams and Wilkins. 2006.

ANAT3004 Cranial and Cervical Anatomy

Credit points: 6 Teacher/Coordinator: Dr Robin Arnold Session: Semester 2 Classes: One 1 hour lecture and two 2 hour tutorials per week. Prerequisites: ANAT2009 or ANAT2010 or BMED2803 or BMED2804 or BMED2805 or BMED2806 Prohibitions: ANAT3904 Assumed knowledge: General knowledge of biology. Assessment: Theory exam, prac exam, continuous assessment

Note: The completion of 6 credit points of MBLG is highly recommended.

This unit of study covers skull, muscles of facial expression, muscles of jaw and neck, ear, eye, nose, oral cavity and larynx and pharynx as well as peripheral distribution of cranial nerves in the head and neck. The functional components of the cranial nerves and their relationship to the special senses and special motor functions such as facial gesture and speech are also studied. Tutorials are designed to encourage students to develop their own approach to the understanding and organisation of subject material. Communication of key concepts and presentation of subject material in an academic context are encouraged and assessed in a major assignment.

Textbooks

Rohan, Yokochi and Lutjen-drecoll, Color Atlas of Human Anatomy.

ANAT3904 Cranial & Cervical Anatomy (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Robin Arnold and Dr Laura Lindsay Session: Semester 2 Classes: Two lectures per week, one 1 hour tutorial per week Prerequisites: For Medical Science: Credit in BMED(2803 or 2804 or 2805 or 2806). For BSc and other students Credit in ANAT(3007 or 2010 or 2009). Prohibitions: ANAT3004 Assessment: Theory exam, practical spot test, participation in dissection practicals and production of detailed weekly reports of the dissection carried out that week Practical field work: One 3 hour dissection per week

Note: Department permission required for enrolment

Note: Students must receive permission from the coordinators for enrolment. Course is subject to availability of donor material for dissection.

This unit of study is an alternative to ANAT3004 Cranial & Cervical for talented students with a special interest in and need for dissection experience. The lecture/tutorial component of the course is run in conjunction with ANAT3004. Students in the advanced course will study the anatomy of the skull, muscles of face, jaw and neck, eye, ear, nose oral cavity, larynx and pharynx as well as the peripheral distribution of cranial nerves in the neck. Dissection will allow students to find these structures in donated human cadavers for themselves and to study and to understand at least some of the many anomalies and variations which characerise human cranial and cervical anatomy.

Textbooks

An Anatomy atlas such as Rohan, Yokochi, Lutjen-Drecoll, Colour Atlas of Human Anatomy

ANAT3006 Forensic Osteology

Credit points: 6 Teacher/Coordinator: Dr Denise Donlon Session: Semester 1 Classes: Two 1 hour lectures, one 2 hour tutorial and one 1 hour practical per week. Prerequisites: Credit in ANAT2009 or Credit in ANAT2002 (for students who completed Intermediate study before 2005) Assumed knowledge: An understanding of basic human musculoskeletal anatomy. Assessment: One 1.5 hour theory exam, one 30 min. prac exam, continuous assessment, case study

Note: The completion of 6 credit points of MBLG is highly recommended.

This unit of study aims to introduce students to the area of forensic osteology, which is the study of human skeletal remains within the legal context. Thus the unit of study aims to help students learn about human morphology and variation through the investigation and identification of human bones. It will also help students gain skills in observation and rigorous record taking and in analysis and interpretation. Production of case reports and practice in acting as 'expert witness' will improve students written and oral skills. An additional objective will be to assist students in learning to deal with legal and ethical issues.

Textbooks

Bass, W. 2005 Human osteology: a laboratory and field manual 5th ed. Missouri Archaeological Society Columbia, Mo.

ANAT3007 Visceral Anatomy

Credit points: 6 Teacher/Coordinator: Dr Robin Arnold Session: Semester 1 Classes: Two 1 hour lectures and two 2 hour practicals per week. Prerequisites: ANAT2009 or ANAT2010 Assumed knowledge: General knowledge of biology. Assessment: Theory exam, prac exam, continuous assessment

This unit of study aims to provide an understanding of the anatomy of the viscera of the thorax, abdomen and pelvis. Structures covered include the heart and associated great vessels, lungs, mediastinum and the abdominal viscera, the alimentary organs and the genitourinary system. The structure of anterior thoracic and abdominal walls and pelvis along with the nerve supply to the viscera and relevant endocrine structures is also covered. Emphasis is placed on the relationship of structure to function especially with respect to the important functions of breathing, digestion, excretion and reproduction. Students will also be encouraged to relate their understanding of the structures studied to current research into these structures in related fields such as molecular biology and physiology.

Textbooks

Rohan, Yokochi and Lutjen-drecoll. Color Atlas of Human Anatomy.

ANAT3008 Musculoskeletal Anatomy

Credit points: 6 Teacher/Coordinator: Dr Richard Ward Session: Semester 2 Classes: Two 1 hour lectures, two 2 hour tutorials/practicals per week. Prerequisites: ANAT2009 or ANAT2002 (for students who completed Intermediate study before 2005) or BMED2803 or BMED2804 or BMED2805 or BMED2806 Prohibitions: ANAT3005 Assumed knowledge: Some knowledge of basic mammalian biology Assessment: One assignment, one 1 hour prac exam, one 1.5 hour theory exam.

The unit provides an opportunity for students to study the topographical and systems anatomy of the upper limb, lower limb and the back regions. Emphasis is placed upon the identification and description of structures and the correlation of structure with function. This includes for the upper limb, its role in manipulation, for the lower limb standing and walking and for the back flexible support and protection. Emphasis is also given to the innervation of the limbs. The unit also aims to develop the general skills of observation, description, drawing, writing and discussion as applying to biological structure.

EMHU3001 Electron Microscopy and Imaging/Theory

Credit points: 6 Teacher/Coordinator: Dr Anne Swan and Dr Alan Jones Session: Semester 2 Classes: Four 1 hour lectures and one 1 hour tutorial per week. Prerequisites: At least 12 cp of Intermediate Science units from any of the following: Anatomy & Histology, Biochemistry, Biology, Chemistry, Mathematics, Microbiology, Molecular Biology & Genetics, Pharmacology, Physics, Physiology or Statistics. For BMedSc students: either 36 cp of Intermediate units including BMed (2501, 2503 & 2505) or 42 cp of BMed Intermediate units including (2801, 2802, 2803 & 2806) Assumed knowledge: General concepts in Biology, and in Biochemistry or in Chemistry. Assessment: Two 1 hour exams, theoretical research assignment as a PowerPoint (TM) submission and protocol.

The course is run conjointly by the Department of Anatomy and Histology and the Electron Microscope Unit. The course will focus on the theoretical aspects of transmission and scanning electron microscopy, the preparation of biological samples for electron microscopy, digital imaging, and freeze-fracture. Immunological and other techniques required in modern research and hospital electron microscope laboratories will also be covered. Students will also receive theoretical training in laser scanning confocal microscopy including the use of fluorescent probes to visualize cellular organelles and cellular processes. Students will undertake a theoretical research project of their choice which is of relevance to the course.

Textbooks

Bozzola JJ and Russell LD. Electron Microscopy. 2nd Edn. Jones and Bartlett, Publishers. 1999.

EMHU3002 Electron Microscopy and Imaging/Prac

Credit points: 6 Teacher/Coordinator: Dr Anne Swan and Dr Alan Jones Session: Semester 2 Classes: Two 2 hour practicals and one 1 hour tutorial per week. Prerequisites: 12 cp as follows: 6 cp from ANAT2008 OR 4 cp from ANAT2001 plus at least 6 cp OR 8 cp respectively of Intermediate Science units of study. For BMedSci: Either 36 credit points of intermediate units including BMed (2501, 2503 & 2505) or 42 credit points of BMed Intermediate units including BMed (2801, 2802, 2803 & 2806) Corequisites: EMHU3001 Assumed knowledge: General concepts in Biology, Histology and in Biochemistry or in Chemistry. Assessment: Two 1 hour exams, practical reports, practical project assignment by PowerPoint (TM) submission and presentation (10 min).

The course is run conjointly by the Department of Anatomy & Histology and the Electron Microscope Unit. The course will provide hands-on training in the operation of transmission and scanning electron microscopes, processing biological samples for electron microscopy, ultrathin sectioning, cryo-ultramicrotomy, freeze-fracture, electron diffraction, digital imaging, immunological and other techniques required in modern research and hospital electron microscope laboratories. Students will also learn the operation of laser scanning confocal microscopes, including the use of fluorescent probes to visualise cellular organelles and cellular processes. Students will apply their knowledge to complete a project of their choice on electron microscopy of a biological sample, from fixation of the sample to interpretation of the resulting electron micrographs.

Textbooks

Bozzola JJ and Russell LD. Electron Microscopy. 2nd Edn. Jones and Bartlett, Publishers. 1999.

HSTO3001 Microscopy & Histochemistry Theory

Credit points: 6 Teacher/Coordinator: Robin Arnold, Prof. Chris Murphy Session: Semester 1 Classes: Usually four 1 hour lectures per week plus some tutorials Prerequisites: (ANAT2008 or ANAT2001) or (BMED 2803 or 2804 or 2805 or 2806) Corequisites: HSTO3002 Assumed knowledge: Basic understanding of biology. Assessment: One 2 hour theory exam.

The aims of this unit of study are to provide a theoretical understanding of why biological tissues need to be specifically prepared for microscopic examination, how differing methods yield different types of morphological information; to allow students to study the theory of different types & modalities of microscopes, how they function & the differing information they provide; to develop an understanding of the theory of why biological material needs to be stained for microscopic examination; to allow students to understand how biological material becomes stained; to develop an understanding of the chemical information provided by biological staining - dyes, enzymes & antibodies.

Textbooks

Keirnan, J.A. Histological & Histochemical Methods 4th Edition, 2008, Scion.

HSTO3002 Microscopy & Histochemistry Practical

Credit points: 6 Teacher/Coordinator: Robin Arnold, Prof. Chris Murphy Session: Semester 1 Classes: Usually 5.5 hours practical per week Prerequisites: (ANAT2008 or ANAT2001) or (BMED 2803 or 2804 or 2805 or 2806) Corequisites: HSTO3001 Assumed knowledge: Basic understanding of biology. Assessment: One 1.5 hour practical exam, 1 practical report, essay.

The aims of this unit of study are to provide an practical understanding of why biological tissues need to be specifically prepared for microscopic examination, to apply different methods to gain different types of morphological information; to allow students to learn to use the different types & modalities of microscopes: to gain first hand experience of how they function & see for themselves the differing information they provide; to learn to stain biological material for microscopic examination; applying their theoretical knowledge & to allow students to develop practical skills in diverse histochemical staining procedures - dyes, enzymes & antibodies.

Textbooks

Keirnan, JA. Histological & Histochemical Methods 4th Edition. Scion. 2008.

HSTO3003 Cells and Development: Theory

Credit points: 6 Teacher/Coordinator: A/Prof Frank Lovicu Session: Semester 2 Classes: Four 1 hour theory lectures and one 1 hour tutorial per week. Prerequisites: For BSc students: ANAT2008 For BMedSc students: 42 credit points of Intermediate BMED units, including: BMED2801, 2802, 2805. Prohibitions: EMHU3001, EMHU3002 Assumed knowledge: (i) An understanding of the basic structure of vertebrates; (ii) An understanding of elementary biochemistry and genetics. Assessment: One 2 hour exam, tutorial research papers.

Note: The completion of 6 credit points of MBLG is highly recommended.

The main emphasis of this unit of study concerns the mechanisms that control animal development. Fertilisation, cleavage, gastrulation and the formation of the primary germ layers are described in a range of animals, mainly vertebrates. Much of the emphasis will be placed on the parts played by inductive cell and tissue interactions in cell and tissue differentiation, morphogenesis and pattern formation. This will be studied at both cellular and molecular levels.

Textbooks

Gilbert SF Developmental Biology. 8th edn. Sinauer Associates Inc: Sunderland, Mass. 2006.

HSTO3004 Cells and Development: Practical (Adv)

Credit points: 6 Teacher/Coordinator: A/Prof Frank Lovicu Session: Semester 2 Classes: One 1 hour tutorial and two 2 hour practicals per week. Prerequisites: Note: This advanced unit of study is only available to select students who have achieved a mark of 65 or above in the following prerequisite units of study. For BSc students: ANAT2008. For BMedSc students: 42 credit points of Intermediate BMED units, including: BMED2801, 2802, 2805. Corequisites: HSTO3003 Prohibitions: EMHU3001, EMHU3002 Assessment: One 1 hour exam, Practical class reports.

Note: The completion of 6 credit points of MBLG is highly recommended.

This advanced unit of study complements HSTO3003 (Cells and Development:Theory) and is catered to provide students with laboratory research experience leading to Honours and higher degrees. It will primarily cover the design and application of experimental procedures involved in cell and developmental biology, using appropriate molecular and cellular techniques to answer developmental questions raised in HSTO3003. This unit of study will promote hands on experience with different animal models, allowing students to observe and examine developing and differentiating tissues at the macroscopic and microscopic level. The main emphasis of this unit of study will concentrate on practical approaches to understanding the mechanisms that control animal development. Fertilization, cleavage, gastrulation and the formation of the primary germ layers are covered. The parts played by inductive cell and tissue interactions in differentiation, morphogenesis and pattern formation are examined at cellular and molecular levels. Note that for some weeks of the course, specialised practical classes will be carried out at the Westmead campus.

Textbooks

Gilbert SF. Developmental Biology. 8th edn. Sinauer Associates Inc: Sunderland, Mass. 2006.

NEUR3002 Neuroscience: Motor Systems & Behaviour

Credit points: 6 Teacher/Coordinator: Dr Vladimir Balcar Session: Semester 1 Classes: Two 1 hour lectures per week, one 3 hour practical per fortnight and one 3 hour tutorial per fortnight. Prerequisites: For BMedSc students: BMED(2801 or 2503) and BMED(2806 or 2505) For other students: (PHSI(2101 or 2001 or 2901 or 2005 or 2905) or ANAT(2003 or 2010)) and 6 credit points of MBLG. Prohibitions: PHSI3001, NEUR3902 Assumed knowledge: It is strongly recommended that students also take unit NEUR3001. ANAT2010 and PHSI2005 is assumed knowledge. Assessment: Two 1 hour exams, neuroanatomy practical test, prac report, paper discussion sessions, library essay.

The aim of this course is to provide students with an introduction to the structure and function of the nervous system. Our current knowledge of how the brain works is based on the analysis of the normal structure of the nervous system and its pathways, the functional effects of lesions and neurological diseases in different parts of the nervous system, and the way that nerve cells work at the molecular, cellular and integrative level. This course focuses on to the neural circuits and the mechanisms that control somatic and autonomic motor systems, motivated behaviours, emotions, and other higher order functions. The lecture series addresses the different topics, each of which offers special insight into the function of the nervous system in health and disease.

Textbooks

Kandel, Schwartz, Jessel. Principles of Neural Science. 4th Ed, Elsevier, NY, 2000 or Bear, Connors, Paradiso. Neuroscience: Exploring the brain. Baltimore: Williams & Wilkins, 2001

NEUR3902 Neuroscience: Motor Systems & Behav. Adv

Credit points: 6 Teacher/Coordinator: Dr Vladimir Balcar Session: Semester 1 Classes: Two 1 hour lectures per week, one 3 hour practical per fortnight and one 3 hour tutorial per fortnight. Advanced students may be exempt from attending some of these classes to permit meetings with supervisor. Prerequisites: For BMedSc students: Credit average in BMED(2801 or 2503) and BMED(2806 or 2505) For other students: Credit average in (PHSI(2101 or 2001 or 2901 or 2005 or 2905) or ANAT(2003 or 2010)) and 6 credit points of MBLG. Prohibitions: NEUR3002, PHSI3001 Assumed knowledge: ANAT2010 and PHSI2005 is assumed knowledge. Assessment: Two 1 hour exams, neuroanatomy practical test, prac report, paper discussion sessions, one research or review essay (research essay will replace some other assessment items from regular course).

Note: Permission from the coordinators is required for entry into this course. It is strongly recommended that students also take unit NEUR3001 or NEUR3901.

This unit of study is an extension of NEUR3002 for talented students with an interest in Neuroscience and research in this field. The lecture/practical component of the course is run in conjunction with NEUR3002. The aim of this course is to provide students with an introduction to the structure and function of the nervous system. Our current knowledge of how the brain works is based on the analysis of the normal structure of the nervous system and its pathways, the functional effects of lesions and neurological diseases in different parts of the nervous system, and the way that nerve cells work at the molecular, cellular and integrative level. This course focuses on to the neural circuits and the mechanisms that control somatic and autonomic motor systems, motivated behaviours, emotions, and other higher order functions. The lecture series addresses the different topics, each of which offers special insight into the function of the nervous system in health and disease.

Textbooks

Kandel, Schwartz, Jessel. Principles of Neural Science. 4th Ed, Elsevier, NY, 2000 or Bear, Connors, Paradiso. Neuroscience: Exploring the brain. Baltimore: Williams & Wilkins, 2001

NEUR3004 Integrative Neuroscience

Credit points: 6 Teacher/Coordinator: Dr Kevin Keay and Dr Catherine Leamey Session: Semester 2 Classes: One 0-1 hour lecture, one 2 hour tutorial plus 1-2 hours small meeting/laboratory session per week. Prerequisites: For BMedSci: 42 credit points of intermediate BMed units. For others: 18 credit points of Intermediate science units of study from Anatomy & Histology, Biochemistry, Biology, Chemistry, Computer Science, Mathematics, Microbiology, Molecular Biology and Genetics, Physiology, Psychology or Statisitics. Prohibitions: NEUR3904, PHSI3002, PHSI3902 Assumed knowledge: Students should be familiar with the material in Bear, Connors & Paradiso Neuroscience: Exploring the Brain. Assessment: One mid-semester exam. 1 hour final exam. Major essay/report. Tutorial participation.

Note: Enrolment in NEUR3003 is HIGHLY RECOMMENDED. Courses are designed to be taken in conjunction with each other.

This second semester unit is designed to introduce students to "cutting edge" issues in the neurosciences and to be taken in conjunction with NEUR3003. This course is a combination of small group lectures on current issues in neuroscience, seminar groups and a research-based library project. Suitably qualified students may have the option of replacing the library project with a laboratory project. Seminars will be held on topics including imaging pain, emotions, cortical development & plasticity, colour vision, stroke and hypertension, long-term regulation of blood pressure, auditory hallucinations and the "cocktail party effect".

Textbooks

Kandell, Schwartz and Jessell. Principles of Neural Science. 4th edition.

NEUR3904 Integrative Neuroscience (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Kevin Keay and Dr Catherine Leamey Session: Semester 2 Classes: One 1 hour lecture, one 2 hour tutorial and 1-2 hour small meeting/laboratory per week. Prerequisites: For BMedSCI: 42 credit points of intermediate BMed units. For others: 18 credit points of Intermediate science units of study from Anatomy & Histology, Biochemistry, Biology, Chemistry, Computer Science, Mathematics, Microbiology, Molecular Biology and Genetics, Physiology, Psychology or Statisitics. Plus, students must have a CREDIT (or better) in NEUR3001/3901 and NEUR3002/3902. Prohibitions: NEUR3004, PHSI3002, PHSI3902 Assumed knowledge: Students should be familiar with the material in Bear, Connors & Paradiso Neuroscience: Exploring the Brain. Assessment: One mid semester exam. One 1 hour final exam. Major essay/report. Tutorial participation. Mini-Lecture.

Note: Department permission required for enrolment

Note: Enrolment in NEUR3003/3903 is HIGHLY RECOMMENDED. Courses are designed to be taken in conjunction with each other. Students must receive permission from the coordinators for enrolment.

This unit encompasses the material taught in NEUR3004. Advanced students perform a research project and present a mini-lecture on a current topic in neuroscience research.

Textbooks

Kandell, Schwartz and Jessell. Principles of Neural Science. 4th edition.

For other NEUR units of study, see the entry under the School of Physiology.

Anatomy and Histology Honours and Graduate Diploma

Taking an Honours or Graduate Diploma provides the opportunity for students to do research on a project supervised by a member of staff. Assessment is based on a thesis summarising the results of the year's research, along with additional studies. To qualify for admission to Honours or the Graduate Diploma the student must obtain an appropriate standard in Senior Anatomy or Histology or Neuroscience.

Anatomy and Histology Higher Degrees

The award courses of Master of Science and Doctor of Philosophy by research are offered in the Faculty of Science by the Discipline of Anatomy and Histology.

Biochemistry

The discipline teaches Biochemistry and Molecular Biology to Science and Medical Science students at the Junior, Intermediate and Senior levels. This discipline area includes the fundamental principles governing the structure, function and interactions of biological molecules, the nature of genetic material and control of its expression and leads to an understanding of the molecular nature of living systems.

Junior program

The junior program has the introductory faculty unit of study Molecular Biology and Genetics Intro (MBLG1001).

Intermediate program

The comprehensive Intermediate program in Biochemistry and Molecular Biology includes Protein Biochemistry (BCHM2071/2971), Human Biochemistry (BCHM2072/2972) and the faculty unit of study Molecular Biology and Genetics A (MBLG2071/2971). Students wishing to progress to the Senior units of study in Biochemistry and Molecular Biology need to have completed MBLG1001 and 12 CP of Intermediate BCHM/MBLG units of study.

Senior program

The Senior program consists of Molecular Biology and Biochemistry - Genes (BCHM3071/3971), Molecular Biology and Biochemistry - Protein (BCHM3081/3981), Human Molecular Cell Biology (BCHM3072/3972), Medical and Metabolic Biochemistry, (BCHM3082/3982), Proteomics and Functional Genomics (BCHM3092/3992). Any four of these units of study constitute a major in Biochemistry. Students seeking further information should consult the relevant Tables in earlier Undergraduate Enrolment Advice chapters.

BCHM2071 Protein Biochemistry

Credit points: 6 Teacher/Coordinator: A/Prof Charles Collyer Session: Semester 1 Classes: Two 2 hour lectures per week, one 1 hour tutorial and one 4 hour practical per fortnight. Prerequisites: 12 credit points of Junior Chemistry and MBLG (1001 or 1901) Corequisites: Recommended concurrent units of study: MBLG2071 and BCHM2072 for progression to Senior Biochemistry. Prohibitions: BCHM2011, BCHM2971 Assumed knowledge: CHEM (1101 and 1102) Assessment: One 2hr theory and theory of practical exam, 2 prac reports.

This unit of study introduces biochemistry by describing the physical and chemical activities of proteins and their functions in cells. The details of protein interactions with other cellular components are presented and the relationship of protein structure and function is discussed. Techniques in protein chemistry and analysis, including proteomics are introduced together with key experiments which reveal the physical basis of the functioning of proteins. This course builds on the protein science presented in MBLG1001 and is ideally suited to students studying intermediate Chemistry together with Biochemistry. The practical course will nurture technical skills in biochemistry and will include protein preparation, the analysis of protein structure and enzymatic assays.

Textbooks

Lehninger Principles of Biochemistry 5th edition by Nelson and Cox

BCHM2971 Protein Biochemistry (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Charles Collyer Session: Semester 1 Classes: Two 1 hour lectures per week, one 1 hour tutorial and one 4 hour practical per fortnight. Prerequisites: 12 credit points of Junior Chemistry and Distinction in MBLG1001 or MBLG1901 Prohibitions: BCHM2011, BCHM2071 Assessment: One 2 hour theory and theory of practical exam, online quizzes, practical assignments and laboratory book reports.

This advanced unit of study introduces biochemistry by describing the physical and chemical activities of proteins and their functions in cells. The details of protein interactions with other cellular components are presented and the relationship of protein structure and function is discussed. Techniques in protein chemistry and analysis, including proteomics are discussed together with key experiments which reveal the physical basis of the functioning of proteins. This course builds on the protein science presented in MBLG1001 and is ideally suited to students studying Intermediate Chemistry together with Biochemistry. The advanced practical course will nurture technical skills in protein biochemistry and will include protein preparation, the interpretation of protein structure, enzymatic assays and biochemical analysis.

Textbooks

Lehninger Principles of Biochemistry 5th edition by Nelson and Cox

BCHM2072 Human Biochemistry

Credit points: 6 Teacher/Coordinator: A/Prof Gareth Denyer Session: Semester 2 Classes: Two lectures per week, one tutorial per fortnight, and one 4 hour practical per fortnight Prerequisites: Either MBLG (1001 or 1901) and 12 credit points of Junior Chemistry or either MBLG2071 or MBLG2971 Prohibitions: BCHM2972, BCHM2002, BCHM2102, BCHM2902, BCHM2112 Assessment: One 3 hour exam, practical reports

This unit of study aims to describe how cells work at the molecular level, with special emphasis on human biochemistry. The chemical reactions which occur inside cells are described in the first series of lectures, Cellular Metabolism. Aspects of the molecular architecture of cells which enable them to transduce messages and communicate are described in the second half of the unit of study. At every stage there is emphasis on the 'whole body' consequences of reactions, pathways and processes. Cellular Metabolism describes how cells extract energy from fuel molecules like fatty acids and carbohydrates, how the body controls the rate of fuel utilisation and how the mix of fuels is regulated (especially under different physiological circumstances such as starvation and exercise). The metabolic inter-relationships of the muscle, brain, adipose tissue and liver and the role of hormones in coordinating tissue metabolic relationships is discussed. The unit also discusses how the body lays down and stores vital fuel reserves such as fat and glycogen, how hormones modulate fuel partitioning between tissues and the strategies involved in digestion and absorption and transport of nutrients. Signal Transduction covers how communication across membranes occurs (i.e. via surface receptors and signaling cascades). This allows detailed molecular discussion of the mechanism of hormone action and intracellular process targeting. The practical component complements the lectures by exposing students to experiments which investigate the measurement of glucose utilisation using radioactive tracers and the design of biochemical assay systems. During the unit of study, generic skills are nurtured by frequent use of computers and problem solving activities. However student exposure to generic skills will be extended by the introduction of exercises designed to teach oral communication, instruction writing and feedback articulation skills.

BCHM2972 Human Biochemistry (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Gareth Denyer Session: Semester 2 Classes: Two lectures per week, one tutorial per fortnight, and one 4 hour practical per fortnight Prerequisites: Distinction in one of (BCHM (2071 or 2971) or MBLG(2071 or 2971)) or (Distinction in MBLG (1001 or 1901) and Distinction average in all other Junior Science Units of Study undertaken). Prohibitions: BCHM2072, BCHM2002, BCHM2102, BCHM2902, BCHM2112 Assessment: One 3 hour exam, practical reports

This advanced unit aims to describe how cells work at the molecular level, with special emphasis on human biochemistry. The chemical reactions which occur inside cells are described in the first series of lectures, Cellular Metabolism. Aspects of the molecular architecture of cells which enable them to transduce messages and communicate are described in the second half of the unit of study. At every stage there is emphasis on the 'whole body' consequences of reactions, pathways and processes. Cellular Metabolism describes how cells extract energy from fuel molecules like fatty acids and carbohydrates, how the body controls the rate of fuel utilization and how the mix of fuels is regulated (especially under different physiological circumstances such as starvation and exercise). The metabolic inter-relationships of the muscle, brain, adipose tissue and liver and the role of hormones in coordinating tissue metabolic relationships is discussed. The unit also discusses how the body lays down and stores vital fuel reserves such as fat and glycogen, how hormones modulate fuel partitioning between tissues and the strategies involved in digestion and absorption and transport of nutrients. Signal Transduction covers how communication across membranes occurs (i.e., via surface receptors and signaling cascades). This allows detailed molecular discussion of the mechanism of hormone action and intracellular process targeting. The practical component complements the lectures by exposing students to experiments which investigate the measurement of glucose utilisation using radioactive tracers and the design of biochemical assay systems. During the unit of study, generic skills are nurtured by frequent use of computers and problem solving activities. However, student exposure to generic skills will be extended by the introduction of exercise designed to teach oral communication, instruction writing and feedback articulation skills.

BCHM3071 Molecular Biology & Biochemistry- Genes

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Merlin Crossley. Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3971, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, practical work.

This unit of study is designed to provide a comprehensive coverage of the activity of genes in living organisms, with a focus on eukaryotic and particularly human systems. The lecture component covers the arrangement and structure of genes, how genes are expressed, promoter activity and enhancer action. This leads into discussions on the biochemical basis of differentiation of eukaryotic cells, the molecular basis of imprinting, epigenetics, and the role of RNA in gene expression. Additionally, the course discusses the effects of damage to the genome and mechanisms of DNA repair. The modern techniques for manipulating and analysing macromolecules such as DNA and proteins and their relevance to medical and biotechnological applications are discussed. Techniques such as the generation of gene knockout and transgenic mice are discussed as well as genomic methods of analysing gene expression patterns. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of genes within the human genome. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology laboratories.

Textbooks

Lewin, B. Genes IX (9th edition, Jones & Bartlett, 2008)

BCHM3971 Molecular Biology & Biochem- Genes (Adv)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Merlin Crossley Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3071, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, practical work.

Textbooks

Lewin, B. Genes IX. (9th edition, Jones & Bartlett, 2008)

BCHM3081 Mol Biology & Biochemistry- Proteins

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Dr Joel Mackay Session: Semester 1 Classes: Two 2 hour lectures week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3981, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, practical work.

This unit of study is designed to provide a comprehensive coverage of the functions of proteins in living organisms, with a focus on eukaryotic and particularly human systems. Its lecture component deals with how proteins adopt their biologically active forms, including discussions of protein structure, protein folding and how recombinant DNA technology can be used to design novel proteins with potential medical or biotechnology applications. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of proteins. It also covers physiologically and medically important aspects of proteins in living systems, including the roles of chaperones in protein folding inside cells, the pathological consequences of misfolding of proteins, how proteins are sorted to different cellular compartments and how the biological activities of proteins can be controlled by regulated protein degradation. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology and protein biochemistry laboratories.

Textbooks

Lesk, A. Introduction to Protein Science. Oxford University Press. 2004.

BCHM3981 Mol Biology & Biochemistry- Proteins Adv

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Dr Joel Mackay Session: Semester 1 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3081, BCHM3001, BCHM3901 Assessment: One 2.5 hour exam, practical work.

Textbooks

Lesk, A. Introduction to Protein Science. Oxford University Press. 2004.

BCHM3072 Human Molecular Cell Biology

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Iain Campbell Session: Semester 2 Classes: One 2 hour lecture per week and one 6 hour practical per fortnight. Prerequisites: (MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/MBLG2971or BCHM2071/2971 or BCHM2072/2972)) or (42CP of Intermediate BMedSc units, including BMED2802 and BMED2804) Prohibitions: BCHM3972, BCHM3002, BCHM3902, BCHM3004, BCHM3904 Assessment: One 2.5 hour exam, practical work.

Note: BExSci/BSc(Nutrition) students successfully progressing though the combined degree meet the pre-requisites for this unit of study

This unit of study will explore the responses of cells to changes in their environment in both health and disease. The lecture course consists of four integrated modules. The first will provide an overview of the role of signalling mechanisms in the control of human cell biology and then focus on cell surface receptors and the downstream signal transduction events that they initiate. The second will examine how cells detect and respond to pathogenic molecular patterns displayed by infectious agents and injured cells by discussing the roles of relevant cell surface receptors, cytokines and signal transduction pathways. The third and fourth will focus on the life, death and differentiation of human cells in response to intra-cellular and extra-cellular signals by discussing the eukaryotic cell cycle under normal and pathological circumstances and programmed cell death in response to abnormal extra-cellular and intra-cellular signals. In all modules emphasis will be placed on the molecular processes involved in human cell biology, how modern molecular and cell biology methods have led to our current understanding of them and the implications of them for pathologies such as cancer. The practical component is designed to complement the lecture course, providing students with experience in a wide range of techniques used in modern molecular cell biology.

Textbooks

Alberts, B. et al. Molecular Biology of the Cell. (5th edition. Garland Science. 2008)

BCHM3972 Human Molecular Cell Biology (Advanced)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Iain Campbell Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/MBLG2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Corequisites: MBLG3999 Prohibitions: BCHM3072, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, practical work.

Textbooks

Alberts, B. et al. Molecular biology of the cell. (5th edition. Garland Science. 2008).

BCHM3082 Medical and Metabolic Biochemistry

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Philip Kuchel Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3982, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, practical work.

Note: BExSci/BSc(Nutrition) students successfully progressing though the combined degree meet the pre-requisites for this unit of study

This unit of study will explore the biochemical processes involved in the operation of cells and how they are integrated in tissues and in the whole human body in normal and diseased states. These concepts will be illustrated by considering whole-body aspects of energy utilisation, fat and glycogen storage and their regulation under normal conditions compared to obesity and diabetes. Key concepts that will be discussed include energy balance, regulation of metabolic rate, control of food intake, tissue interactions in fuel selection, the role of adipose tissue and transport of fuel molecules from storage organs and into cells. Particular emphasis will be placed on how the modern concepts of metabolomics, coupled with new methods, including magnetic resonance techniques, molecular biology methods and microarray technologies, as well as studies of the structure and function of enzymes, have led to our current understanding of how metabolic processes are normally integrated and how they become deranged in disease states. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in modern medical and metabolic biochemistry.

BCHM3982 Medical and Metabolic Biochemistry (Adv)

Credit points: 6 Teacher/Coordinator: Mrs Jill Johnston, Prof Philip Kuchel Session: Semester 2 Classes: Two 1 hour lectures per week and one 6 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3082, BCHM3002, BCHM3004, BCHM3902, BCHM3904 Assessment: One 2.5 hour exam, practical work.

BCHM3092 Proteomics and Functional Genomics

Credit points: 6 Teacher/Coordinator: Dr Stuart Cordwell, Mrs Jill Johnston Session: Semester 2 Classes: Two 1 hour lectures per week and one 3 hour practical per week. Prerequisites: MBLG (1001 or 1901) and 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, including BMED2802 and BMED2804. Prohibitions: BCHM3992, BCHM3098 Assessment: One 2.5 hour exam, practical work.

This unit of study will focus on the high throughput methods for the analysis of gene structure and function (genomics) and the analysis of proteins (proteomics), which are at the forefront of discovery in the biomedical sciences. The course will concentrate on the hierarchy of gene-protein-structure-function through an examination of modern technologies built on the concepts of genomics versus molecular biology, and proteomics versus biochemistry. Technologies to be examined include DNA sequencing, nucleic acid and protein microarrays, two-dimensional gel electrophoresis of proteins, uses of mass spectrometry for high throughput protein identification, isotope tagging for quantitative proteomics, high-performance liquid chromatography, high-throughput functional assays, affinity chromatography and modern methods for database analysis. Particular emphasis will be placed on how these technologies can provide insight into the molecular basis of changes in cellular function under both physiological and pathological conditions as well as how they can be applied to biotechnology for the discovery of biomarkers, diagnostics, and therapeutics. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in proteomics and genomics.

Textbooks

Liebler, DC. Introduction to proteomics : tools for the new biology. Humana Press. 2002.

BCHM3992 Proteomics and Functional Genomics (Adv)

Credit points: 6 Teacher/Coordinator: Dr Stuart Cordwell, Mrs Jill Johnston Session: Semester 2 Classes: Two 1 hour lectures per week and one 3 hour practical per fortnight. Prerequisites: MBLG (1001 or 1901) and Distinction in 12 CP of Intermediate BCHM/MBLG units (taken from MBLG2071/2971 or BCHM2071/2971 or BCHM2072/2972) or 42CP of Intermediate BMedSc units, with Distinction in BMED2802 and BMED2804. Prohibitions: BCHM3092, BCHM3098 Assessment: One 2.5 hour exam, practical work.

This unit of study will focus on the high throughput methods for the analysis of gene structure and function (genomics) and the analysis of proteins (proteomics) which are at the forefront of discovery in the biomedical sciences. The course will concentrate on the hierarchy of gene-protein-structure-function through an examination of modern technologies built on the concepts of genomics versus molecular biology, and proteomics versus biochemistry. Technologies to be examined include DNA sequencing, nucleic acid and protein microarrays, two-dimensional gel electrophoresis of proteins, uses of mass spectrometry for high throughput protein identification, isotope tagging for quantitative proteomics, high-performance liquid chromatography, high-throughput functional assays, affinity chromatography and modern methods for database analysis. Particular emphasis will be placed on how these technologies can provide insight into the molecular basis of changes in cellular function under both physiological and pathological conditions as well as how they can be applied to biotechnology for the discovery of biomarkers, diagnostics, and therapeutics. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in proteomics and genomics.
The lecture component of this unit of study is the same as BCHM3092. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.

Textbooks

Liebler, DC. Introduction to proteomics : tools for the new biology. Humana Press. 2002.

Biochemistry Honours

An honours program of study designed for those wishing to enter research or to undertake work leading to a higher degree is conducted in the fourth year. The program runs from early February until mid-November (mid-year entry will be available from 2008 and runs from early-September until mid-July). It provides the opportunity for laboratory research on a project supervised by a staff member, culminating in the production of a research thesis. During the year each student is also required to undertake a coursework program that involves six tutorials and an exam based on the critical evaluation of scientific manuscripts. Assessment of the year's work is based largely on the student's performance on the research project, and a written report on that project.

Honours Research Areas

Biochemistry Honours is conducted within the School of Molecular and Microbial Biosciences. The School offers projects in a wide range of research areas including Physical Biochemistry and Structural Biology, Microbiology, Proteomics and Biotechnology, Nutrition and Metabolism and Molecular Biology and Genetics. Specific research topics currently offered include: Anticancer drugs: synthesis and mechanism of action; Biochemistry of cellular signal transduction; The causes of diabetes and/or obesity; Chaperones and amyloid formation; X-ray crystallography of proteins and drug DNA complexes; NMR studies of membrane transport and metabolism in cells; Antibiotic resistance mechanisms in microbial pathogens; Eukaryotic transcription factors; Protein structure modeling; Molecular biology of humans and yeasts; Gene expression in transgenic mice; Glycaemic index of foods; oligosaccharides in human milk.

Applying for admission to Honours

An application form providing the list of possible research projects is provided to interested students and is available from the honours coordinator. Students must arrange to speak with potential supervisors and should choose two discipline areas and three supervisors in order of preference on the application form. A decision on honours entry is made in December. Attempts will be made where possible to assign students to the supervisor of their choice but this will not always be possible. In such cases the School will work with students to find an available project. Students should note that some supervisors cannot accommodate mid-year entrants. The usual requirement for acceptance into the Honours program is a credit average in a major relevant to the project of interest; any student with an undergraduate background relevant to specific projects (including Chemistry, Biochemistry, Nutrition and Dietetics, Microbiology, Immunobiology, Physiology, Neuroscience, Mathematics, Physics, Biology or other related Medical Sciences) may be admitted. It should be noted that the number of students accepted into the Honours program may be limited because of resource restrictions (availability of a supervisor and/or laboratory space) and that, in the event of there being more applicants than resources will allow, offers will be made on the basis of academic merit. The honours unit of study codes are listed in the Honours chapter of this handbook - chapter 12. The Honours year coordinator is Dr Stuart Cordwell.

Bioinformatics

Bioinformatics is an interdisciplinary area of science, involving Computer Science, Computational Science, Mathematics, Statistics, and the Life Sciences (ie. biology, medicine, etc). It is responsible for the development and use of computer systems, databases, software, networks, and hardware to solve scientific problems in a wide variety of areas ranging from biology to medicine. Due to its interdisciplinary nature, the BSc (Bioinformatics) degree is composed of units of study that are offered also to students enrolled in other degrees, the general aim being to equip the students enrolled in the BSc (Bioinformatics) degree with knowledge in key areas of relevance to Bioinformatics.

First Year

In the first year of their study, students devote time to units of study offered by the School of Biological Sciences, School of Chemistry, School of Information Technologies, School of Mathematics and Statistics, and School of Molecular and Microbial Biosciences (see Table 1A in chapter 4).

Second Year

In the second and third year of their study, students divide time equally between the Life Sciences and the mathematical, statistical, and computational sciences, choosing units of study from those offered by the School of Biological Sciences, School of Information Technologies, School of Mathematics and Statistics, School of Molecular and Microbial Biosciences, School of Physics, and the Department of Pharmacology (see Table 1A).

Third Year

In the third year of their study, the students are highly recommended to enrol in BIOL3027/3927 (Bioinformatics and Genomics) and BCHM3092/3992 (Proteomics and Functional Genomics). Furthermore, the students complete a unit of study - BINF3101 (Bioinformatics Project) - that is designed specifically to give them an opportunity to do real research, supervised by scientists from the bio-medical disciplines. For further information regarding third year requirements see Table 1A.

BINF3101 Bioinformatics Project

Credit points: 6 Teacher/Coordinator: A/Prof L Jermiin, Dr M Charleston Session: Semester 2 Classes: Meeting with academic supervisor 1hour per week & class meeting 1 hour per week. Prerequisites: INFO3402 and 12 credit points from Intermediate Biology, Molecular Biology and Genetics, Biochemistry, Microbiology, Pharmacology Prohibitions: COMP3206, BINF3001, INFO3600, SOFT3300, SOFT3600, SOFT3200, SOFT3700 Assumed knowledge: INFO2110 and (INFO1103 or INFO1903) Assessment: Individual presentation, oral examination and group report

This unit will provide students an opportunity to apply the knowledge and practice the skills acquired in the prerequisite and qualifying units, in the context of designing and building a substantial bioinformatics application. Working in groups, students will carry out the full range of activities including requirements capture, analysis and design, coding, testing and documentation.

Biological Sciences

Advice on units of study

Any student needing advice before enrolling should make an appointment to see an adviser from the School of Biological Sciences. Phone 9351 5819 (First Year Biology Office) for enquiries about junior units; or 9351 2848 for enquiries about Intermediate and Senior units. Units of study in Biology include those with the prefixes BIOL (Biology), PLNT (Plant Sciences) and MBLG (Molecular Biology and Genetics), as well as ENVI2111. Refer to the relevant sections of this handbook for details of PLNT, MBLG and ENVI units of study. For information on how to major in Biology or Plant Sciences, with advice on units of study, see www.bio.usyd.edu/au/futurestudents/future_ug.html.

Assistance during semester

The offices of junior year Biology staff and the Biology Learning Centre are on the 5th floor of Carslaw. Staff are available for consultation throughout semester. The School maintains a website that provides access to resources for students: www.bio.usyd.edu.au.

Summer School: January-February

The School of Biological Sciences offers some junior units of study in the Sydney Summer School. Consult The Sydney Summer School website for more information: www.summer.usyd.edu.au. Students may enrol in junior units of study offered at Summer School before their first semester of university enrolment.

Biology Bridging Course

Students who have not completed HSC Biology or equivalent are strongly encouraged to attend the Biology Bridging Course before commencing any Biology study at university. Details are available each year from the Continuing Education Website: www-secure.cce.usyd.edu.au.

Junior units of study

Students may take up to four units of study in Junior Biology: BIOL1001 or 1911 (Concepts in Biology); BIOL1003 or 1903 (Human Biology); BIOL1002 or 1902 (Living Systems); and MBLG1001 (Molecular Biology and Genetics).

BIOL1001 Concepts in Biology

Credit points: 6 Session: Semester 1,Summer Main Classes: Three 1 hour lectures and one 3 hour practical per week. Prohibitions: BIOL(1911 or 1101 or 1901) Assumed knowledge: None. However, students who have not completed HSC Biology (or equivalent) are strongly advised to take the Biology Bridging Course (in February). Assessment: One 2.5 hour exam, assignments, quizzes.

Note: It is recommended that BIOL (1001 or 1911) be taken concurrently with all other Junior units of study in Biology. Students who have completed HSC Biology and scored 80+ should enrol in BIOL1911. Students who lack 80+ in HSC Biology but have a UAI of at least 93 may enrol in BIOL1911 with permission from the UEO. The completion of MBLG 1001 is highly recommended.

Concepts in Biology is an introduction to the major themes of modern biology. The unit emphasizes how biologists carry out scientific investigations, from the cellular/molecular level to the level of ecosystems. Topics covered in lectures and practicals include: introductory cell biology, with particular emphasis on how cells obtain and use energy; the diversity and biology of microorganisms; an introduction to molecular biology through the role of DNA in protein synthesis, including current developments in DNA technology; genetics or organisms; theories of evolution and phylogenetic analysis, and how they are used to interpret the origins of the diversity of modern organisms; and interactions between organisms in biological communities, with emphasis on Australian ecology.

Textbooks

Knox R B et al. Biology, 3rd ed. McGraw-Hill. 2005

BIOL1911 Concepts in Biology (Advanced)

Credit points: 6 Session: Semester 1 Classes: 3 lectures & one 3 hrs prac/wk. Prerequisites: 80+ in HSC 2-unit Biology (or equivalent) or Distinction or better in a University level Biology unit, or by invitation. Prohibitions: BIOL (1001, 1101, 1901). Assessment: One 2.5hr exam, assignments, quizzes.

Note: Department permission required for enrolment

Note: It is recommended that BIOL (1001 or 1911) be taken concurrently with all other Junior units of study in Biology. The completion of MBLG1001 is highly recommended.

Concepts in Biology (Advanced) builds on the main themes introduced in HSC Biology, with emphasis on current research in biology. Topics covered in lectures and practicals include: cell biology, with particular emphasis on how cells obtain and use energy; the diversity and biology of microorganisms; current developments in molecular biology, including recombinant DNA technology and the human genome project; inheritance, genetics and the origins of diversity of modern organisms; and interactions between organisms in biological communities, with emphasis on Australian ecology. Research-based lectures will expand on the general lecture topics and include current investigations of such diverse topic areas as cancer therapies, metabolic malfunction, anarchy in beehives, evolutionary studies of snake reproductive strategies, plant phylogeny and global environmental change.

Textbooks

As for BIOL1001.

BIOL1003 Human Biology

Credit points: 6 Session: Semester 1,Summer Main Classes: Two 1 hour lectures per week (3 lectures in weeks 1 and 11). One 3 hour practical class and 6-9 hours HBOnline work every two weeks covering online practical activities, prework and homework. Prohibitions: BIOL1903, EDUH1016. Assumed knowledge: HSC 2-unit Biology. Students who have not taken HSC biology are strongly advised to take the Biology Bridging Course in February. Assessment: One 2.5 hour exam, assignment, poster and quizzes.

Note: It is recommended that BIOL (1001 or 1911) be taken concurrently with this unit of study.

This Unit of Study has three main components: lectures, practicals and HBOnline activities. The unit of study provides an introduction to human evolution and ecology, cell biology, physiology and anatomy, through lectures and practical work. The unit of study includes human nutrition, distribution of essential requirements to and from cells, control of body functions and defence mechanisms. After discussion of reproduction and development, it concludes with modern studies and research prospects in biotechnology and human genetics.
This unit of study, together with BIOL (1001 or 1911 or 1002 or 1902), or MBLG (1001 or 1901), provides entry to Intermediate units of study in Biology, but the contents of BIOL (1002 or 1902) is assumed knowledge for BIOL (2011 or 2012) and PLNT 2003, and students entering these units with BIOL (1003 or 1903) will need to do some preparatory reading.

Textbooks

Seeley, RR et al. 2005. Essentials of Anatomy and Physiology. 5th ed., McGraw Hill.

BIOL1903 Human Biology (Advanced)

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lectures per week (3 lectures in weeks 1 and 11). One 3 hour practical class and 6-9 hours HBOnline work every two weeks covering online practical activities, prework and homework. Prerequisites: UAI of at least 93 and HSC Biology result in the 90+, or Distinction or better in a University level Biology unit, or by invitation. Prohibitions: BIOL1003, BIOL1904, EDUH1016 Assessment: One 2.5 hour exam, assignment, group project presentation, discussion activities and quizzes.

This unit of study is the same as BIOL1003 except for the addition of 3 special seminars from guest speakers, a three hour ethics and bioscience component and three student peer group case study presentations.

Textbooks

As for BIOL1003

BIOL1002 Living Systems

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lectures and one 3 hour practical per week. Prohibitions: BIOL1902 Assumed knowledge: HSC 2-unit Biology. Students who have not undertaken an HSC biology course are strongly advised to complete a Biology Bridging Course (in February). Assessment: One 2.5 hour exam, assignments, quizzes.

Note: It is recommended that BIOL (1001 or 1911) be taken before this unit of study. This unit of study, together with BIOL (1001 or 1911) provides entry to all Intermediate units of study in biology in the School of Biological Sciences.

Living Systems deals with the biology of organisms, from bacteria to large plants and animals, and emphasises the ways in which they can live in a range of habitats. The importance of energy in living systems, and how elements are used and recycled in biological communities, are described. The unit of study includes lectures and laboratory classes on the physiology of nutrition and growth, basic physiological processes of animals and plants, the ways in which organisms control and integrate their activities, and their reproduction. Finally applications of knowledge of genetics and ecology to practical problems in agriculture and conservation are introduced.

Textbooks

Knox R B et al. Biology. 3rd ed. McGraw-Hill. 2005

BIOL1902 Living Systems (Advanced)

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lectures and one 3 hour practical per week. Prerequisites: UAI of at least 93 and HSC Biology result in the 90th percentile or better, or Distinction or better in a University level Biology unit, or by invitation. Prohibitions: BIOL1002, BIOL1904, BIOL1905 Assessment: One 2.5 hour exam, assignments, quizzes, independent project.

Note: Department permission required for enrolment

This unit of study shares lectures and practical classes with BIOL1002 but also includes more demanding alternative components of Living Systems

Textbooks

As for BIOL1002.

MBLG1001 Molecular Biology and Genetics (Intro)

Credit points: 6 Teacher/Coordinator: Dr Dale Hancock Session: Semester 2 Classes: Two 1 hour lectures per week; one 1 hour tutorial and one 4 hour practical per fortnight. Prohibitions: AGCH2001, BCHM2001, BCHM2101, BCHM2901, MBLG2101, MBLG2901, MBLG2001, MBLG2111, MBLG2771, MBLG2871, MBLG1901 Assumed knowledge: 6 credit points of Junior Biology and 6 cp of Junior Chemistry Assessment: One 2.5 hour exam, in-semester skills test and assignments

Textbooks

Clarke, D. Molecular Biology. Elsevier 2005.

MBLG1901 Molecular Biology and Genetics (Adv)

Credit points: 6 Teacher/Coordinator: Dr Dale Hancock Session: Semester 2 Classes: Two 1 hour lectures per week; one 1 hour tutorial and one 4 hour practical per fortnight, four 1 hour seminars per semester. Prerequisites: UAI of 95 or minimum Band 5 in HSC chemistry and biology or by invitation Prohibitions: AGCH2001, BCHM2001, BCHM2101, BCHM2901, MBLG2101, MBLG2901, MBLG2001, MBLG2111, MBLG2771, MBLG2871, MBLG1001 Assumed knowledge: HSC Chemistry and Biology OR 6 credit points of Junior Biology and 6 cp of Junior Chemistry Assessment: One 2.5 hour exam, in-semester skills test and assignments

The lectures in this unit of study introduce the "Central Dogma" of molecular biology and genetics -i.e., the molecular basis of life. The course begins with the information macro-molecules in living cells: DNA,RNA and protein, and explores how their structures allow them to fulfill their various biological roles. This is followed by a review of how DNA is organised into genes leading to discussion of replication and gene expression (transcription and translation). The unit concludes with an introduction to the techniques of molecular biology and, in particular, how these techniques have led to an explosion of interest and research in Molecular Biology. The practical component complements the lectures by exposing students to experiments which explore the measurement of enzyme activity, the isolation of DNA and the 'cutting' of DNA using restriction enzymes. However,a key aim of the practicals is to give students higher level generic skills in computing, communication, criticism, data analysis/evaluation and experimental design.
The advanced component is designed for students interested in continuing in molecular biology. It consists of 7 advanced lectures (replacing 7 regular lectures) and 3 advanced laboratory sessions (replacing 3 regular practical classes). The advanced lectures will focus on the experiments which led to key discoveries in molecular biology. The advanced practical sessions will give students the opportunity to explore alternative molecular biology experimental techniques. Attendance at MBLG1999 seminars is strongly encouraged.

Textbooks

Clarked, D. Molecular Biology. Elsevier 2005.

Intermediate units of study

Students who wish to take Intermediate Biology units of study should refer to the booklet 'Information for Students Considering Intermediate Biology Units of Study' which is available at the website www.bio.usyd.edu.au/currentstudents/second.html and from the School Office (Science Rd Cottage, A10). Students should discuss their preferences unit of study choices, together with the other units of study they propose to study, with a Biology staff member before enrolling. If you are considering going on to study Senior Biology you must satisfy the Intermediate qualifying and prerequisite units of study for the senior units of study you intend taking. Units of study in Intermediate Biology include those with the prefixes BIOL (Biology), PLNT (Plant Sciences) and MBLG (Molecular Biology and Genetics), as well as ENVI2111. Refer to the relevant sections of this handbook for details of PLNT (Plant Science), MBLG (Molecular Biology and Genetics) and ENVI (Environmental Studies) units of study. MBLG (2071 or 2971) and MBLG (2072 or 2972) are highly recommended to be taken by Science students in combination with all 6 credit point Intermediate Biology units of study, and are qualifying units for BIOL (3018, 3025, 3026, 3027). Note that MBLG (2071 or 2971) is a prerequisite for students wishing to enrol in MBLG (2072 or 2972). See entry for MBLG 2071, 2971, 2072 and 2972 under the heading Molecular Biology and Genetics. The following Intermediate units of study are offered:

Semester 1 units of study

BIOL2011 Invertebrate Zoology, BIOL2016 Cell Biology, PLNT2001 Applied Plant Biochemistry, PLNT2002 Aust Flora: Ecology and Conservation, ENVI2111 Conservation Biology and Applied Ecology and MBLG2071 Molecular Biology and Genetics A. (Plus Advanced versions of the above – BIOL29xx, PLNT29xx, ENVI2911, MBLG29xx).

Semester 2 units of study

BIOL2012 Vertebrates and their Origins, BIOL2017 Entomology, BIOL2018 Introduction to Marine Biology, PLNT2003 Plant Form and Function, MBLG2072 Molecular Biology and Genetics B. (Plus Advanced versions of the above – BIOL29xx, PLNT29xx, MBLG29xx).

Note:

Only one component of each of the above listed Intermediate units of study may be credited towards the degree. Qualifying units of study for certain Senior Biology units of study are defined as combinations of 6 credit points of Intermediate Biology units of study (see the Senior unit of study descriptions or Information for Students booklets). For details of PLNT units please refer to the Plant Science entry in this chapter.

BIOL2011 Invertebrate Zoology

Credit points: 6 Teacher/Coordinator: Dr E May. Session: Semester 1 Classes: Two 1 hour lectures, one 1 hour tutorial and one 2 hour practical per week, or three 1 hour lectures and one 2 hour practical per week. Prerequisites: BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for students in the BSc[Marine Science] stream: 6 credit points of Junior Chemistry and 6 credit points of Junior Physics). Prohibitions: BIOL2911. Assumed knowledge: BIOL (1002 or 1902). Assessment: Mid-semester test, one 2 hour theory exam, one 1.5 hour prac exam, one essay, tutorial work.

Note: This unit of study may be taken alone, but when taken with BIOL2012 provides entry into certain Senior Biology units of study. The content of BIOL (1002 or 1902) is assumed knowledge and students entering without BIOL (1002 or 1902) will need to do some preparatory reading. The completion of 6 credit points of MBLG units of study is highly recommended.

This unit of study provides a thorough grounding in the diversity of animals by lectures and detailed laboratory classes, which include dissections and demonstrations of the functional anatomy of invertebrates. The material is presented within the conceptual framework of evolution and the principles and use of phylogeny and classification. Tutorials further explore concepts of phylogeny, animal structure and function, and provide opportunity to develop oral and written communication skills. The unit of study is designed to be taken in conjunction with BIOL2012 Vertebrates and their Origins; the two units of study together provide complete coverage of the diversity of animals at the level of phylum.

BIOL2911 Invertebrate Zoology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr E May Session: Semester 1 Classes: See BIOL2011 Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for students in BSc[Marine Science] stream: 6 credit points of Junior Chemistry and 6 credit points of Junior Physics). These requirements may be varied and students with lower averages should consult the Unit Executive Officer Prohibitions: BIOL2011. Assumed knowledge: BIOL (1002 or 1902). Assessment: See BIOL2011

Note: The completion of 6 credit points of MBLG units of study is highly recommended.

Qualified students will participate in alternative components of BIOL2011 Invertebrate Zoology. The content and nature of these components may vary from year to year.

BIOL2012 Vertebrates and their Origins

Credit points: 6 Teacher/Coordinator: Dr E L May Session: Semester 2 Classes: Two 1 hour lectures, one 1 hour tutorial and one 2 hour practical per week, or three 1 hour lectures and one 2 hour practical per week; one field trip. Prerequisites: BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for students in the BSc[Marine Science] stream: 6 credit points of Junior Chemistry and 6 credit points of Junior Physics). Prohibitions: BIOL 2912. Assumed knowledge: The content of BIOL (1002 or 1902) is assumed knowledge and students who have not completed BIOL (1002 or 1902) will need to do some preparatory reading. Assessment: Mid-semester test, one 2 hour theory exam, one 1.5 hour prac exam, one assignment, one essay, tutorial work.

Note: This unit of study may be taken alone, but when taken with BIOL2011 provides entry into certain Senior Biology units of study. The completion of MBLG1001 is highly recommended.

This unit of study completes the grounding in the diversity of animals at the level of phylum introduced in BIOL2011 Invertebrate Zoology, by lectures and detailed laboratory classes, which include dissections and demonstrations of the functional anatomy of vertebrates and invertebrate phyla not covered in BIOL2011. Tutorials further explore concepts of phylogeny, animal structure and function, and provide opportunity to develop oral and written communication skills. Students may choose to attend an intensive 3.5 day field trip, which takes place in the July break preceding Semester 2.

BIOL2912 Vertebrates and their Origins (Advanced)

Credit points: 6 Teacher/Coordinator: Dr E May Session: Semester 2 Classes: See BIOL2012 Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for students in BSc[Marine Science] stream: 6 credit points of Junior Chemistry and 6 credit points of Junior Physics). These requirements may be varied and students with lower averages should consult the Unit Executive Officer Prohibitions: BIOL2012. Assumed knowledge: The content of BIOL (1002 or 1902) is assumed knowledge and students who have not completed BIOL (1002 or 1902) will need to do some preparatory reading. Assessment: See BIOL2012

Note: The completion of MBLG1001 is highly recommended.

Qualified students will participate in alternative components of BIOL2012 Vertebrates and their Origins. The content and nature of these components may vary from year to year.

BIOL2016 Cell Biology

Credit points: 6 Teacher/Coordinator: Dr Murray Thomson. Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: 6 credit points of BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for students in the BSc (Marine Science) 6 credit points of Junior Chemistry and either an additional 6 credit points of Junior Chemistry or 6 credit points of Junior Physics). Prohibitions: BIOL2916. Assessment: One 3 hour theory exam, one project assignment, one prac report

Note: The completion of MBLG1001 is highly recommended.

This unit of study focuses on contemporary principles in cell biology and development in plant and animals, with emphasis on cellular functions and favouring the molecular perspective. Topics include cancer and control of cell division and migration, pre-programmed cell death, molecular signaling and transport systems, cellular endocrinology and embryonic development. The practical component provides students with hands-on training in key industry techniques using modern equipment and is therefore of immense benefit to students contemplating honours study or a career in molecular and cellular research. The unit of study is designed to complement intermediate Molecular Biology and Genetics units and leads ideally to various senior units of study in biology, including Plant Growth & Development, Applications of Recombinant DNA Techology, Evolutionary Genetics & Animal Behaviour, Fungi in the Environment, Animal Physiology, Bioinformatics and Genomics, as well as senior units of study in biochemistry.

Textbooks

Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P. 2002. Molecular Biology of the Cell. 4th Edition. Garland Science.

BIOL2916 Cell Biology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Murray Thomson. Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology. 12 credit points of Junior Chemistry (or for students in the BSc (Marine Science) 6 credit points of Junior Chemistry and either an additional 6 credit points of Junior Chemistry or 6 credit points of Junior Physics. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. This is a core Intermediate unit in the BSc (Molecular Biology and Genetics) award course. Prohibitions: BIOL2016. Assessment: One 3 hour exam, one practical report and one project assignment.

Note: The completion of MBLG1001 is highly recommended.

Qualified students will participate in alternative components of BIOL2016 Cell Biology.

Textbooks

As for BIOL2016

BIOL2017 Entomology

Credit points: 6 Teacher/Coordinator: Dr Dieter Hochuli Session: Semester 2 Classes: Two 1 hour lecture and one 3 hour practical per week. Prerequisites: BIOL (1001 or 1911 or 1101 or 1901 ) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for BSc (Marine Science) students 6 credit points of Junior Chemistry and either an additional 6 credit points of Junior Chemistry or 6 credit points of Junior Physics. Prohibitions: BIOL2917. Assumed knowledge: BIOL (2011 or 2911). Assessment: Two hour theory exam, two practical reports, spot test, review and an insect collection. Practical field work: The practical classes give students a working knowledge of the major orders of insects and species of importance, as well as principles of collection, preservation and identification. Project work considers forensic entomology, learning in social insects and insect behaviour. Field trips to the Australian Museum and Taronga Zoo will also consider insect husbandry and the role of insects in education. There will also be an introduction to entomological databases and an assignment that involves the making and presentation of a small collection of insects.

This is a general but comprehensive introduction to Insect Biology taught in 3 integrated modules. The first module examines morphology, classification, life histories and development, physiology, ecology, behaviour, conservation, and the biology of prominent members of major groups. The other two modules examine new developments in entomological research, focusing on research strengths at the University of Sydney, the biology of social insects and insect behaviour.

BIOL2917 Entomology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Dieter Hochuli. Session: Semester 2 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for BSc (Marine Science) students: 6 credit points of Junior Chemistry and either an additonal 6 credit points of Junior Chemistry or 6 credit points of Junior Physics. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: BIOL2017. Assumed knowledge: BIOL (2011 or 2911). Assessment: Two hour theory exam, two practical reports, spot test, review and an insect collection.

Qualified students will participate in alternative components of BIOL2017, Entomology. The content and nature of these components may vary from year to year.

BIOL2018 Introduction to Marine Biology

Credit points: 6 Teacher/Coordinator: Dr Adele Pile. Session: Semester 2 Classes: 2x1hr lectures per week. 6x1hr tutorials, 1x8hr field trip, 3x4hr field trips and 1x3hr practical. Prerequisites: BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for BSc (Marine Science) students 6 credit points of Junior Chemistry and either an additional 6 credit points of Junior Chemistry or 6 credit points of Junior Physics). Prohibitions: BIOL2918, MARS (2006 or 2906 or 2007 or 2907). Assumed knowledge: 12 credit points of Junior Biology; MARS2005. Assessment: Two hour theory exam, four written reports.

This unit will describe some of the ways in which the properties of the oceans affect marine organisms. It also introduces coral reefs and other marine ecosystems, together with their productivity, biological oceanography, the reproductive biology of marine organisms, and marine biological resources. The practical elements will provide the core skills and techniques that will equip students to perform laboratory and field studies in marine biology. The unit will introduce appropriate methodologies for the collection, handling and analysis of data; the scientific principles underlying experimental design; and the effective communication of scientific information.

Textbooks

Castro, P. and Humber, M. 2007. Marine Biology 4th Ed. McGraw-Hill Higher Education, Sydney.

BIOL2918 Introduction to Marine Biology (Adv)

Credit points: 6 Teacher/Coordinator: Dr Adele Pile. Session: Semester 2 Classes: 2x1hr lectures per week. 6x1hr tutorials, 1x8hr field trip, 3x4hr field trips and 1x3hr practical. Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for BSc (Marine Science) students 6 credit points of Junior Chemistry and either an additional 6 credit points of Junior Chemistry or 6 credit points of Junior Physics. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: BIOL2018, MARS (2006 or 2906 or 2007 or 2907). Assumed knowledge: 12 credit points of Junior Biology; MARS2005. Assessment: Two hour theory exam, four written reports.

Note: Entry is restricted and selection is made from applicants on the basis of previous performance.

This unit has the same objectives as BIOL2018, Introduction to Marine Biology, and is suitable for students wishing to pursue aspects from the unit in greater depth. Students taking this unit will participate in alternatives to some elements of the ordinary level course and will be required to pursue the unit objectives by more independent means. Specific details of the unit will be announced in meetings, during the first week of teaching.

Textbooks

As for BIOL2018

Refer to the relevant sections of this handbook for details on the following units of study:

Environmental Studies: ENVI2111 Conservation Biology and Applied Ecology. Plant Science: PLNT2001 Applied Plant Biochemistry, PLNT2002 Australian Flora: Ecology and Conservation, PLNT2003 Plant Form and Function. Molecular Biology and Genetics: MBLG2071 Molecular Biology and Genetics A, MBLG2072 Molecular Biology and Genetics B. (Plus Advanced versions of the above – ENVI2911, PLNT29xx, MBLG29xx).

Senior units of study

Students who intend to proceed from Intermediate to Senior Biology should refer to the booklet Information for Students Considering Intermediate Biology Units of Study, which is available from the School Office (The Cottage, A10 Science Road) and at www.bio.usyd.edu.au/currentstudents/third.html. Students should discuss their unit of study choices with a Biology Staff member before enrolling. A major in Biology comprises 24 credit points of Senior Biology units of study. Units of study followed by (MS) may be used to count towards a major in Marine Science.

Senior units of study offered: Pre-semester 1

BIOL3010 Tropical Wildlife Biology and Management - (Pre-Semester 1 intensive). BIOL3017 Fungi in the Environment – (Summer Break and Semester 1). (Plus Advanced versions of the above – BIOL39xx)

Senior units of study offered: Semester 1

BIOL3006 Ecological Methods (MS), BIOL3011 Ecophysiology (MS), BIOL3012 Animal Physiology, BIOL3013 Marine Biology (MS), BIOL3018 Applications of Recombinant DNA Technology, BIOL3027 Bioinformatics and Genomics, PLNT 3003 Systematics and Evolution of Plants. (Plus advanced versions of the above - BIOL 39xx, PLNT 39xx).

Senior units of study offered: Pre-semester 2 intensive

BIOL3008 Marine Field Ecology (MS) – (Pre-Semester 2 intensive). BIOL3009 Terrestrial Field Ecology – (Pre-Semester 2 intensive). (Plus Advanced versions of the above - BIOL 39xx)

Senior units of study offered: Semester 2

BIOL3007 Ecology (MS), BIOL3025 Evolutionary Genetics and Animal Behaviour, BIOL3026 Developmental Genetics, PLNT3002 Plant Growth and Development. (Plus advanced versions of the above - BIOL 39xx, PLNT 39xx).

Further information

Details of lectures and practical classes are given in the booklet: Information for Students Considering Intermediate Biology Units of Study. Any combination of units may be chosen subject to timetable and prerequisite constraints. Units of study are offered subject to student numbers, availability of staff and resources. Quotas exist on BIOL 3008/3908 Marine Field Ecology, and BIOL 3009/3909 Terrestrial Field Ecology. When necessary, selection is based on academic merit. Students majoring in Marine Science must enrol in 24 credit points of Senior Marine Science, including at least 6 credit points of Senior Biology (from those marked MS) and 6 credit points from GEOS units. If these credit points are taken as part of Marine Science major they may not be counted towards a Biology major.

Selecting units of study

Select your unit of study after checking (a) that you have passed the qualifying units of study stated for each unit of study, and (b) checking your timetable. You are strongly advised to check the most up-to-date information (including details of quotas in Marine modules) in the booklet: Information for Students Considering Intermediate Biology Units of Study, available from the School Office (The Cottage, A10, Science Road).

Textbooks

A list of textbooks and reference books is provided in the booklet: Information for Students Considering Intermediate Biology Units of Study.

BIOL3006 Ecological Methods

Credit points: 6 Teacher/Coordinator: Dr Clare McArthur (UEO) Session: Semester 1 Classes: Two 1 hour lecture and one 3 hour laboratory per week. Prerequisites: 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL units and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3906, MARS3102 Assumed knowledge: BIOL (2011 or 2911 or 2012 or 2912) or PLNT (2002 or 2902). Assessment: One 2 hour exam 40%, practical assignments (including calculations, reports and reviews) 60%.

This unit will consider ecology as a quantitative, experimental and theoretical science. It is concerned with the practical skills and philosophical background required to explore questions and test hypotheses in the real world. Application of ecological methods and theory to practical problems will be integrated throughout the unit of study. Lectures will focus on sound philosophical and experimental principles, drawing on real examples for demonstration of concepts, and will be useful as one basis for informed conservation and management of natural populations and habitats. Practical methods will include effective samplings,determining patterns of distribution and abundance, estimating ecological variables, and statistical analysing field data. Computer simulations and analyses will be used where appropriate.

Textbooks

Dytham, C. 2003. Choosing and using statistics. A biologist's guide. 2nd edition. Blackwell Science. Melbourne.

BIOL3906 Ecological Methods (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Clare McArthur (UEO) Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour laboratory per week Prerequisites: Distinction average in 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: BIOL3006, MARS3102 Assumed knowledge: BIOL (2011 or 2911 or 2012 or 2912) or PLNT (2002 or 2902). Assessment: One 2 hour exam 40%, practical assignments (including calculations, reports and reviews) 60%.

This unit has the same objectives as BIOL3006 Ecological Methods, and is suitable for students who wish to pursue certain aspects in greater depth. Entry is restricted, and selection is made from the applicants on the basis of their previous performance. Students taking this unit of study will participate in alternatives to some elements of the standard course and will be required to pursue the objectives by more independent means. Specific details of this unit of study and assessment will be announced in meetings with students in week 1 of semester 1. This unit of study may be taken as part of the BSc (Advanced) program.

Textbooks

As for BIOL3006

BIOL3007 Ecology

Credit points: 6 Teacher/Coordinator: A/Prof Ross Coleman Session: Semester 2 Classes: Two 1 hour lecture and one 3 hour laboratory per week Prerequisites: 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL, and ENVI2111 or MARS2006 ; or 12 credit points of MARS units, including MARS2006 Prohibitions: BIOL3907, MARS3102 Assumed knowledge: Although not prerequisites, knowledge obtained from BIOL3006/3906, and BIOL3008/3908 and/or BIOL3009/3909, is strongly recommended. Assessment: One 2hr exam, presentations, essay, project report.

This unit explores the dynamics of ecological systems, and considers the interactions between individual organisms and populations, organisms and the environment, and ecological processes. Lectures are grouped around four dominant themes: Interactions, Evolutionary Ecology, The Nature of Communities, and Conservation and Management. Emphasis is placed throughout on the importance of quantitative methods in ecology, including sound planning and experimental designs, and on the role of ecological science in the conservation, management, exploitation and control of populations. Relevant case studies and examples of ecological processes are drawn from marine, freshwater and terrestrial systems, with plants, animals, fungi and other life forms considered as required. Students will have some opportunity to undertake short term ecological projects, and to take part in discussions of important and emerging ideas in the ecological literature.

Textbooks

Ecology: an Australian Perspective (2003) Edited by P. Attiwill and B. Wilson. Oxford University Press.

BIOL3907 Ecology (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Ross Coleman (UEO) Session: Semester 2 Classes: Two 1 hour lectures and one 3 hour laboratory per week. Prerequisites: Distinction average in 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3007, MARS3102 Assumed knowledge: Although not prerequisites, knowledge obtained from BIOL3006/3906, and BIOL3008/3908 and/or BIOL3009/3909, is strongly recommended. Students entering this unit of study should have achieved Distinction average. Assessment: One 2hr exam, presentations, essay, project report.

This unit has the same objectives as BIOL3007 Ecology, and is suitable for students who wish to pursue certain aspects in greater depth. Entry is restricted, and selection is made from the applicants on the basis of their previous performance. Students taking this unit of study will participate in alternatives to some elements of the standard course and will be required to pursue the objectives by more independent means. Specific details of this unit of study and assessment will be announced in meetings with students in week 1 of semester 2. This unit of study may be taken as part of the BSc (Advanced) program.

Textbooks

As for BIOL3007

BIOL3008 Marine Field Ecology

Credit points: 6 Teacher/Coordinator: A/Prof Ross Coleman Session: S2 Intensive Classes: Intensive 8 day-field course held in the pre-semester break. Prerequisites: 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3908, MARS3102. Assumed knowledge: BIOL (3006 or 3906). Prior completion of one of these units is very strongly recommended. Assessment: Discussion groups, research project proposal, biodiversity survey report, data analysis and checking, research project report.

Note: Dates: 2 - 9 July 2009.

This field course provides a practical introduction to the experimental analysis of marine populations and assemblages. Students gain experience using a range of intertidal sampling techniques and develop a detailed understanding of the logical requirements necessary for manipulative ecological field experiments. No particular mathematical or statistical skills are required for this subject. Group experimental research projects in the field are the focus of the unit during the day, with lectures and discussion groups about the analysis of experimental data and current issues in experimental marine ecology occurring in the evening.
Note: Successful completion of BIOL3008/3908 and BIOL3007/3907 is a prerequisite for students wishing to proceed to Honours in Marine Ecology.

Textbooks

No textbook is prescribed but Coastal Marine Ecology of Temperate Australia. Eds. Underwood, A.J. & Chapman, M.G. 1995. University of New South Wales Press, provides useful background reading.

BIOL3908 Marine Field Ecology (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Ross Coleman. Session: S2 Intensive Classes: One 8 day field course held in the pre-semester break, plus four 1 hour tutorials during semester 2. Prerequisites: Distinction average in 12 credit points of Intermediate Biology; or 6 credit points of Intermediate Biology and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3008, MARS3102. Assumed knowledge: BIOL (3006 or 3906). Prior completion of one of these units is very strongly recommended. Assessment: Discussion groups, research project proposal, biodiversity report, data analysis and checking, research project report.

Note: Dates: 2 - 9 July 2009. Plus four 1 hour tutorials during semester 2.

This unit has the same objectives as Marine Field Ecology BIOL3008, and is suitable for students wishing to pursue certain aspects of marine field ecology in a greater depth. Entry is restricted and selection is made from applicants on the basis of past performance. Students taking this unit of study will be expected to take part in a number of additional tutorials after the field course on advanced aspects of experimental design and analysis and will be expected to incorporate these advanced skills into their analyses and project reports. This unit may be taken as part of the BSc(Advanced).
Note: Successful completion of BIOL3008/3908 and BIOL3007/3907 is a prerequisite for students wishing to proceed to Honours in Marine Ecology.

Textbooks

As for BIOL 3008.

BIOL3009 Terrestrial Field Ecology

Credit points: 6 Teacher/Coordinator: Dr Glenda Wardle Session: S2 Intensive Classes: One 6 day field trip held in the pre-semester break, and 4 practical classes during weeks 1-4 in Semester 2. Prerequisites: 12 credit points of Intermediate Biology or ANSC2004 and BIOM2001. Prohibitions: BIOL3909 Assumed knowledge: BIOL (3006 or 3906). Prior completion of one of these units is very strongly recommended. Assessment: Discussions and quiz (10%), research project proposal and brief presentation (10%), sampling project report (20%), specimen collection (10%), research project report (50%).

Note: One 6 day field trip held in the pre-semester break (19 - 24 July 2009) and 4 practical classes during weeks 1-4 in Semester 2.

This field course provides practical experience in the experimental analysis of terrestrial populations and assemblages. Students learn a broad range of ecological sampling techniques and develop a detailed understanding of the logical requirements necessary for manipulative ecological field experiments. The field work incorporates survey techniques for plants, small mammals and invertebrates and thus provides a good background for ecological consulting work. Students attend a week-long field course and participate in a large-scale research project as well as conducting their own research project. Invited experts contribute to the lectures and discussions on issues relating to the ecology, conservation and management of Australia's terrestrial flora and fauna.

BIOL3909 Terrestrial Field Ecology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Glenda Wardle. Session: S2 Intensive Classes: 6 day field trip held in the pre-semester break and 4 practical classes during weeks 1-4 in Semester 2. Prerequisites: Distinction average in 12 credit points of Intermediate Biology or ANSC2004 and BIOM2001 Prohibitions: BIOL3009. Assumed knowledge: BIOL (3006 or 3906). Prior completion of one of these units is very strongly recommended. Assessment: Discussions and quiz (10%), research project proposal and brief presentation (10%), sampling project report (20%), specimen collection (10%), research project report (50%).

Note: One 6 day field trip held in the pre-semester break (19 - 24 July 2009) and 4 practical classes during weeks 1-4 in Semester 2.

This unit has the same objectives as BIOL3009 Terrestrial Field Ecology, and is suitable for students who wish to pursue certain aspects in greater depth. Entry is restricted, and selection is made from applicants on the basis of previous performance. Students taking this unit of study will complete an individual research project on a topic negotiated with a member of staff. It is expected that much of the data collection will be completed during the field trip but some extra time may be needed during semester 2. Specific details of this unit of study and assessment will be announced in meetings with students at the beginning of the unit. This unit of study may be taken as part of the BSc (Advanced) program.

BIOL3010 Tropical Wildlife Biology and Management

Credit points: 6 Session: S1 Intensive Classes: 5 day Field School, followed by 5 days of classes at Sydney University. Prerequisites: 12 credit points of Intermediate Biology (BIOL/ENVI/PLNT). Prohibitions: BIOL3910 Assumed knowledge: None, although BIOL2011/2911 would be useful. Assessment: One 2 hour exam, one 1 hour practical exam, a 2000 word practical, a 15 min oral presentation, .

Note: Dates: 15 February - 20 February 2009 Northern Territory, followed by tutorials and practical classes at the University of Sydney 23 February - 27 February 2009.

Due to its isolation from the rest of the world and unique evolutionary history, the Australian terrestrial vertebrate fauna (amphibians, reptiles, birds and mammals) is highly unusual, and hence has a lot to offer in the study of evolutionary processes. The rarity of some species and Australia's unusual climate and landforms present special challenges for the management of our native wildlife. This unit of study addresses the evolution, ecology and management of Australia's terrestrial fauna. The subject comprises a five-day field course in the Northern Territory, near Darwin, where students will learn field-based techniques in wildlife management, combined with lectures given by experts in the evolution, ecology and management of wildlife.

BIOL3910 Tropical Wildlife Biol & Management Adv

Credit points: 6 Session: S1 Intensive Classes: 5 day Field School followed by 5 days of classes at Sydney University. Prerequisites: Distinction average in 12 credit points of Intermediate Biology (BIOL/ENVI/PLNT). Prohibitions: BIOL3010 Assumed knowledge: None, although Vertebrates and their Origins would be useful. Assessment: One 2 hour exam, one 1 hour practical exam, a 2000 word practical report, one 15 min oral presentation.

Note: Department permission required for enrolment

Note: Department permission required for enrolment. Dates: 15 - 20 February 2009 Northern Territory followed by tutorials and practical classes at the University of Sydney 23 - 27 February 2009.

This unit has the same objectives as BIOL3010 Tropical Wildlife Biology and Management, and is suitable for students who wish to pursue certain aspects in greater depth. Entry is restricted, and selection is made from the applicants on the basis of their previous performance. Students taking this unit of study will participate in alternatives to some elements of the standard course and will be required to pursue the objectives by more independent means. Specific details of this unit of study and assessment will be announced in meetings with students at the beginning of the unit. This unit of study may be taken as part of the BSc(Advanced) program.

BIOL3011 Ecophysiology

Credit points: 6 Teacher/Coordinator: UEO A/Prof Seebacher Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour laboratory per week. Prerequisites: 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3911 Assumed knowledge: BIOL (2012 or 2912 or 2016 or 2916) or PLNT (2003 or 2903). Assessment: One 1.5 hour exam, field trip seminar, laboratory report.

Note: The completion of 6 credit points of MBLG units is highly recommended.

Ecophysiology is a conceptually based unit of study that covers physiological interactions between organisms and their environments. The unit focuses on the evolution of physiological capacities and how these may explain the ecology and biogeography or organisms. Lectures are based on the current primary literature. Lecturers have active research programs on the topics they cover and will present original research findings where appropriate. Examples are mainly from insects, vertebrates, and marine organisms. As part of the practical component, students design their own original research projects to be conducted during a week-end long field trip, and during self-directed laboratory sessions.

BIOL3911 Ecophysiology (Advanced)

Credit points: 6 Teacher/Coordinator: UEO A/Prof Seebacher Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour laboratory per week. Prerequisites: Distinction average in 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: BIOL3011 Assumed knowledge: BIOL (2012 or 2912 or 2016 or 2916) or PLNT (2003 or 2903) Assessment: One 1.5 hour exam, field trip seminar, independent project report.

Note: The completion of 6 credit points of MBLG units is highly recommended.

Ecophysiology (Advanced) shares the same lectures as BIOL 3011 Ecophysiology, but it includes an independent project in place of the laboratory report (equivalent of 30% of Ecophysiology). The content and nature of the independent project varies and students are encouraged to design their own project.

BIOL3012 Animal Physiology

Credit points: 6 Teacher/Coordinator: Dr M Thomson Session: Semester 1 Classes: Two 1 hour lectures, one 4 hour laboratory per week. Prerequisites: 12 credit points of Intermediate Biology including BIOL (2012 or 2912 or 2016 or 2916) or PLNT (2003 or 2903) and 6 additional credit points of Intermediate Biology (BIOL/MBLG/PLNT/ENVI). Prohibitions: BIOL3912 Assessment: One 1.5 hour exam, laboratory/library reports.

Note: The completion of 6 credit points of MBLG units is highly recommended.

In this unit of study students explore how animal physiology is influenced by environmental factors. There is a strong emphasis on how modern research is expanding the field of physiology throughout a diverse array of vertebrates and invertebrates and the unit is designed to complement Ecophysiology. Particular emphasis will be placed on nutrition, animal behaviour, energy metabolism, endocrinology and neurobiology, as well as more exotic animal physiology such as electro-reception in sharks and infra-red detection of prey in snakes.

BIOL3912 Animal Physiology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr M Thomson Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour laboratory per week. Prerequisites: Distinction average in 12 credit points of Intermediate Biology including BIOL (2012 or 2912 or 2016 or 2916) or PLNT (2003 or 2903) and 6 additional credit points of Intermediate Biology. These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: BIOL3012 Assessment: One 1.5 hour exam, laboratory reports, independent project report.

Note: The completion of 6 credit points of MBLG units is highly recommended.

Animal Physiology (Advanced) shares the same lectures as Animal Physiology, but it includes an independent project in place of one or more components of the laboratory classes to the equivalent of 30% of Animal Physiology. The content and nature of the independent project may vary from year to year.

BIOL3013 Marine Biology

Credit points: 6 Teacher/Coordinator: Dr Adele Pile Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour laboratory per week. Prerequisites: 12 credit points of Intermediate Biology, or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3913 Assumed knowledge: BIOL 2018 or MARS2006 Assessment: Practical reports, paper criticisms and other assignments

Note: The completion of 6 credit points of MBLG units is highly recommended.

We will examine in detail processes that are important for the establishment and maintenance of marine communities. Lectures will expose students to the key ideas, researchers and methodologies within selected fields of marine biology. Laboratory sessions will complement the lectures by providing students with hands-on experience with the organisms and the processes that affect them. Students will develop critical analysis skills while examining the current literature.

BIOL3913 Marine Biology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Adele Pile Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour laboratory per week. Prerequisites: Distinction average in 12 credit points of Intermediate Biology; or 6 credit points of Intermediate BIOL and ENVI2111 or MARS2006; or 12 credit points of Intermediate MARS units, including MARS2006. Prohibitions: BIOL3013 Assumed knowledge: BIOL2018 or MARS2006 Assessment: Practical reports, paper criticisms and other assignments.

Note: The completion of 6 credit points of MBLG units is highly recommended.

Qualified students will participate in alternative components of the BIOL3103 Marine Biology unit. The content and nature of these components may vary from year to year.

BIOL3017 Fungi in the Environment

Credit points: 6 Teacher/Coordinator: Dr Peter McGee Session: S1 Intensive Classes: 40 hours of practicals in a two week intensive program held immediately prior to semester one (laboratory componet each morning from 16-27 February 2009), plus the equivalent of 30 hours self-guided study during the semester. Prerequisites: 12 credit points of Intermediate Biology, or 6 credit points of Intermediate Biology and 6 Intermediate credit points of either Microbiology or Geography. Prohibitions: BIOL3917 Assessment: One 2 hour take home exam, laboratory and written assignments.

Note: Dates: 16-27 February 2009. The completion of 6 credit points of MBLG units is highly recommended.

The unit is designed to develop understanding of fungal ecology in relation to environmental and rehabilitation biology, biological control of pests and pathogens, and soil microbiology. Emphasis will be placed on the function of fungi, and the benefit provided by fungi in symbiotic interactions with plants, including mycorrhizal fungi and shoot-borne endophytes. Physiological and ecological implications of the interactions will also be considered. Each student will design and implement a research project. Analytical thinking and research-led activity will be encouraged. Using broad scientific approaches, each student will gain the capacity to work cooperatively to find and analyse information from primary sources, develop approaches to test their understanding, and to present their work in a scientifically acceptable manner. Students will develop a deeper understanding of one area of fungal biology through independent study. Part of the learning material will be available on the internet.

BIOL3917 Fungi in the Environment (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Peter McGee Session: S1 Intensive Classes: 40 hours of practical work in a two week intensive program immediately prior to semester one (labs run from 16 - 27 February 2009), plus the equivalent of 30 hours self-guided study during the semester. Prerequisites: Distinction average in 12 credit points of Intermediate Biology, or 6 credit points of Intermediate Biology and 6 Intermediate credit points of either Microbiology or Geography. Prohibitions: BIOL3017 Assessment: One 2 hour take home exam, research project, laboratory and written assignments.

Note: The completion of 6 credit points of MBLG units is highly recommended.

Qualified students will be encouraged to develop a research project under supervision. The content and nature of the research will be agreed on with the executive officer.

BIOL3018 Applications of Recombinant DNA Tech

Credit points: 6 Teacher/Coordinator: Dr B Lyon Session: Semester 1 Classes: Two 1 hour lectures per week; up to 4 hours laboratory per week. Prerequisites: 12 credit points from MBLG (2071/297), MBLG (2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including BMED 2802. Prohibitions: BIOL3918 Assessment: One 2 hour exam, practical reports, assignment/seminar

A unit of study with lectures, practicals and tutorials on the application of recombinant DNA technology and the genetic manipulation of prokaryotic and eukaryotic organisms. Lectures cover the applications of molecular genetics in biotechnology and consider the impact and implications of genetic engineering. Topics include the cloning and expression of foreign genes in bacteria, yeast, animal and plant cells, novel human and animal therapeutics and vaccines including human gene therapy, new diagnostic techniques for human and veterinary disease, the transformation of animal and plant cells, the genetic engineering of animals and plants, and the environmental release of genetically-modified (transgenic) organisms. Practical work may include nucleic acid isolation and manipulation, gene cloning and PCR amplification, DNA sequencing and computer analysis of gene sequences, immunological detection of proteins, and the genetic transformation and assay of plants.

BIOL3918 Applications of Recombinant DNA Tech Adv

Credit points: 6 Teacher/Coordinator: Dr B Lyon Session: Semester 1 Classes: Two 1 hour lectures per week, and up to 4 hours laboratory per week. Prerequisites: Distinction average in 12 credit points from MBLG (2071/2971), MBLG (2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including Distinction in BMED2802. Prohibitions: BIOL3018 Assessment: One 2 hour exam, assignment/seminar

Qualified students will participate in alternative components of BIOL3018 Applications of Recombinant DNA Technology. The content and nature of these components may vary from year to year.

BIOL3025 Evolutionary Genetics & Animal Behaviour

Credit points: 6 Teacher/Coordinator: Prof Oldroyd, A/Prof Beekman. Session: Semester 2 Classes: Two 1 hour lectures and up to 4 hours laboratory per week. Prerequisites: 12 credit points from (MBLG 2071/2971), MBLG (2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including BMED2802. Prohibitions: BIOL3925 Assessment: One 1.5 hour exam, assignments, seminar

The unit of study covers the main themes of modern evolutionary theory including population genetics. In the practicals, students use molecular methods to quantify genetic variation in natural populations. Using these skills we will search for population subdivision and discuss how this can lead to speciation. Lectures will cover how the evolution of traits can be tracked using the comparative method. We will consider how studies of sex ratios, sexual selection, kin selection, game theory and quantitative genetics can illuminate the mechanisms by which animals have evolved, and explain why they behave as they do. We will then consider if these themes have any relevance to human sociobiology. The unit also covers the role of genetics in conservation. There will be a field trip to collect organisms for population genetic analysis. There will be plenty of opportunity in the student seminars to examine the more controversial aspects of modern evolutionary thought.

BIOL3925 Evolutionary Gen. & Animal Behaviour Adv

Credit points: 6 Teacher/Coordinator: Prof Oldroyd, A/Prof Beekman. Session: Semester 2 Classes: Two 1 hour lectures and up to 4 hours of laboratory per week. Prerequisites: Distinction average in12 credit points from (MBLG2071/2971), (MBLG2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including Distinction in BMED2802. Prohibitions: BIOL3025. Assessment: One 1.5 hour exam, assignments, seminar.

Qualified students will participate in alternative components of BIOL3025 Evolutionary Genetics and Animal Behaviour. The content and nature of these components may vary from year to year. Some assessment will be in an alternative format to components of BIOL3025.

BIOL3026 Developmental Genetics

Credit points: 6 Teacher/Coordinator: Dr Saleeba Session: Semester 2 Classes: Two 1 hour lectures and up to 3 hours laboratory per week. Prerequisites: 12 credit points from MBLG (2071/2971) and MBLG (2072/2972). For BMedSc students: 36 credit points of Intermediate BMED units including BMED2802. Prohibitions: BIOL3926 Assessment: One 2 hour exam, assignments.

This unit discusses current understanding of developmental genetics with emphasis on molecular genetics. The developmental genetics of model plants and animals will be investigated. In particular, the molecular genetics of vertebrate development, pattern formation and gene expression, the study of mutants in development, plant specific processes such as root formation and flowering, will be covered making reference to modern techniques such as transgenics, recombinant DNA technology, and tissue-specific expression analysis. Various methods of genetic mapping will be covered. Practical work complements the theoretical aspects and develops important genetical skills.

BIOL3926 Developmental Genetics (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Saleeba Session: Semester 2 Classes: Two 1 hour lectures and up to 3 hours of laboratory per week. Prerequisites: Distinction average in 12 credit points from MBLG (2071/2971), and MBLG (2072/2972). For BMedSc students: 36 credit points of Intermediate BMED units including Distinction in BMED2802. Prohibitions: BIOL3026 Assessment: One 2 hour exam, assignments.

Qualified students will participate in alternative components to BIOL3026 Developmental Genetics. The content and nature of these components may vary from year to year. Some assessment will be in an alternative format to components of BIOL3026.

BIOL3027 Bioinformatics and Genomics

Credit points: 6 Teacher/Coordinator: Dr Firth Session: Semester 1 Classes: Two 1 hour lectures and up to 3 hours laboratory per week. Prerequisites: 12 credit points from MBLG (2071/2971), MBLG (2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including BMED 2802. Prohibitions: BIOL3927 Assessment: One 2 hour exam, assignments

A unit of study comprising lectures, practical assignments and tutorials on the application of bioinformatics to the storage, retrieval and analysis of biological information, principally in the form of nucleotide and amino acid sequences. Although the main emphasis is on sequence data, other forms of biological information are considered.
The unit begins with the assembly and management of nucleotide sequence data and an introduction to the databases that are normally used for the storage and retrieval of biological data, and continues with signal detection and analysis of deduced products, sequence alignment, and database search methods. Phylogenetic reconstruction based on distance-based methods, parsimony methods and maximum-likelihood methods is described and students are introduced to the idea of tree-space, phylogenetic uncertainty, and taught to evaluate phylogenetic trees and identify factors that will confound phylogenetic inference. Finally, whole genome analysis and comparative genomics are considered. The unit gives students an appreciation of the significance of bioinformatics in contemporary biological science by equipping them with skills in the use of a core set of programs and databases for "in silico" biology, and an awareness of the breadth of bioinformatics resources and applications.

BIOL3927 Bioinformatics and Genomics (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Firth Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour laboratory per week. Prerequisites: Distinction average in 12 credit points from MBLG (2071/2971), MBLG (2072/2972) and Intermediate Biology units. For BMedSc students: 36 credit points of Intermediate BMED units including Distinction in BMED2802. Prohibitions: BIOL3027 Assessment: One 2 hour exam, assignments.

Qualified students will participate in alternative components of BIOL3027 Bioinformatics and Genomics. The content and nature of these components may vary from year to year. Some assessment will be in alternative format.

Refer to the relevant sections of this handbook for details on the following PLNT units of study

Plant Science PLNT3001 Plant Cell and Environment, PLNT3002 Plant Growth and Development, PLNT3003 Systematics and Evolution of Plants. (Plus advanced versions of the above - PLNT39xx).

Biology Honours

A single Honours program in Biology accommodates students who have completed 24 credit points of Senior Biology Life Sciences units and have a minimum WAM of 65. Information about qualifications for entry into Honours is available from the School Office (Science Road Cottage, A10), or on the School of Biological Sciences website. During the honours year the principles established in the first three years of the undergraduate award course are further developed, and students are introduced to a wider field of biology and biological techniques. Students may elect to specialise in any of the aspects of biology that are studied in the School. Projects jointly supervised by staff in other Schools or Departments within the University may also be considered. Students who have indicated their intention of entering the Honours program will be notified of acceptance after the publication of the second semester Senior examination results. Honours students start their academic year in late January, or in July.

The honours year comprises:

1. A project in which the student investigates a problem and presents oral and written accounts of his or her research. 2. A coursework unit – BIOL4015 Conducting and Communicating Research Scientific Research Practice in Biology, instruction in experimental design, and other technical training. The degree will be awarded on the basis of: (a) written assignments from coursework units; (b) marks awarded for a thesis on the subject of the project.

Graduate Diploma in Science (Biology)

The Graduate Diploma program in Biology is available as a one year full-time or two year part-time course. The course is intended for students wishing to progress beyond a pass degree but not via the honours degree, or who are ineligible for admission to honours. Students enrolled in the one year course will follow the same program as Biology honours students and be assessed using similar criteria. Students may therefore elect to specialise in any area within the research interests of the School. Projects jointly supervised by staff in other Schools or Departments within the University may also be considered. Students undertaking the two year course (part-time) will follow the same curriculum but will satisfactorily complete the instructed elements of the course before progressing to the project element at the end of the first year. Students who have signified their intention to enter the Graduate Diploma program will be notified of acceptance after the publication of the second semester senior examination results. Graduate Diploma students are expected to start their academic year in late January, or in July. The composition of the Graduate Diploma course is identical to that for honours (see Biology Honours).

Postgraduate study in Biology

MSc and PhD degrees by research are available in the School. On completion of an honours degree (at first or second class level), MSc Preliminary course or Graduate Diploma in Science, students may pursue candidature for MSc degrees by research. The range of research fields offered and the fields of each member of academic staff are listed on the School's website at www.bio.usyd.edu.au.

Cell Pathology

Cell Pathology is taught by the Department of Pathology, located on Level 5 of the Blackburn Building (phone 9351 2414). The department maintains a website to help students access information and resources: www.pathology.usyd.edu.au.

CPAT3201 Pathogenesis of Human Disease 1

Credit points: 6 Teacher/Coordinator: Dr Bob Bao Session: Semester 2 Classes: Three 1 hour lectures and one 3 hour tutorial per week. Prerequisites: At least 6cp intermediate of one of the following: ANAT or BCHM or MBLG or BIOL or HPSC or MICR or PCOL or PHSI, or as the head of department determines. Assessment: One 2 hour exam (60%), one major research essay (1500w) (20%) generation of detractors for MCQ stems with referenced support texts for these (20%).

The Pathological Basis of Human Disease 1 unit of study modules will provide a theoretical background to the scientific basis of the pathogenesis of disease. Areas covered in theoretical modules include: tissue responses to exogenous factors, adaptive responses to foreign agents, cardiovascular/pulmonary/gut responses to disease, forensic science, neuropathology and cancer.
The aim of the course is
- To give students an overall understanding of the fundamental biological mechanisms governing disease pathogenesis in human beings.
- To introduce to students basic concepts of the pathogenesis, natural history and complications of common human diseases.
- To demonstrate and exemplify differences between normality and disease.
- To explain cellular aspects of certain pathological processes.
Together with CPAT3202, the unit of study would be appropriate for those who intend to proceed to Honours research, to professional degrees or to careers in biomedical areas such as hospital science. Together with CPAT3202, it fulfils the Pathology requirements for the Centre for Chiropractic at Macquarie University.

Textbooks

Robbins Basic Pathology, Kumar, Cotran & Robbins 7th Edition, 2003, Publ Saunders, Philadelphia, Pennsylvania, USA.

CPAT3202 Pathogenesis of Human Disease 2

Credit points: 6 Teacher/Coordinator: Dr Bob Bao Session: Semester 2 Classes: One 2 hour practical per week and one 2 hour museum practical. Prerequisites: At least 6cp intermediate of one of the following: ANAT or BCHM or MBLG or BIOL or HPSC or MICR or PCOL or PHSI, or as the head of department determines. Corequisites: CPAT3201 Assessment: One 2 hour exam (70%), Museum Practical Reports (30%).

The Pathological Basis of Human Disease 2 unit of study modules will provide a practical background to the scientific basis of the pathogenesis of disease. Areas covered in practical modules include disease specimen evaluation on a macroscopic and microscopic basis.
The aim of the course is
- To enable students to gain an understanding of how different organ systems react to injury and to apply basic concepts of disease processes.
- To equip students with skills appropriate for careers in the biomedical sciences and for further training in research or professional degrees.
At the end of the course students will:
- Have acquired practical skills in the use of a light microscope.
- Have an understanding of basic investigative techniques for disease detection in pathology.
- Be able to evaluate diseased tissue at the macroscopic and microscopic level.
- Have the ability to describe, synthesise and present information on disease pathogenesis.
- Transfer problem-solving skills to novel situations related to disease pathogenesis.
The unit of study would be appropriate for those who intend to proceed to Honours research, to professional degrees or to careers in biomedical areas such as hospital science. Together with CPAT3201, it fulfils the Pathology requirements for the Centre for Chiropractic at Macquarie University.

Textbooks

Robbins Basic Pathology, Kumar, Cotran & Robbins 7th Edition, 2003, Publ Saunders, Philadelphia, Pennsylvania, USA.

Chemical Engineering

The School of Chemical and Biomolecular Engineering is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in this branch of engineering it offers CHNG1103 Introduction to Material and Energy Transformations to students enrolled in the Faculty of Science. Details regarding this unit of study can be obtained from the Faculty of Engineering and Information Technologies Handbook. This unit of study is intended to give a science student some insight into the principles which control the design and performance of large scale industrial processing plants. Faculty of Science students are invited to enrol in any other chemical engineering unit of study, provided they have the appropriate prerequisites and have consulted with the Head of School.

Advanced standing for Science students transferring to BEng(Chemical Engineering)

Science graduates may obtain up to two years advanced standing towards a Bachelor of Engineering degree in Chemical Engineering. Students wishing to undertake this option must seek academic advice from the School of Chemical and Biomolecular Engineering. Further details regarding admission to the BE in Chemical Engineering may be obtained from the Engineering and Information Technologies Faculty Office.

Chemistry

Junior units of study

The School of Chemistry offers a number of 6 credit point units of study to cater for the differing needs of students. These units of study are: CHEM1001 Fundamentals of Chemistry 1A, CHEM1002 Fundamentals of Chemistry 1B, CHEM1101 Chemistry 1A, CHEM1102 Chemistry 1B, CHEM1108 Chemistry 1 Life Sciences A, CHEM1109 Chemistry 1 Life Sciences B, CHEM1901 Chemistry 1A (Advanced), CHEM1902 Chemistry 1B (Advanced), CHEM1903 Chemistry 1A (Special Studies Program), CHEM 1904 Chemistry 1B (Special Studies Program).

Obtaining detailed information about units

Details on Chemistry Junior Units of Study is available at the Chemistry First Year website (http://firstyear.chem.usyd.edu.au). This information is also provided in a booklet: 'Information for Students', which is distributed to students at the time of enrolment, and is also available from the Chemistry First Year Office.

CHEM1001 Fundamentals of Chemistry 1A

Credit points: 6 Session: Semester 1 Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prohibitions: CHEM1101, CHEM1901, CHEM1109, CHEM1903 Assumed knowledge: There is no assumed knowledge of chemistry for this unit of study, but students who have not undertaken an HSC chemistry course are strongly advised to complete a chemistry bridging course before lectures commence. Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

The aim of the unit of study is to provide those students whose chemical background is weak (or non-existent) with a good grounding in fundamental chemical principles together with an overview of the relevance of chemistry. There is no prerequisite or assumed knowledge for entry to this unit of study. Lectures: A series of 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1002 Fundamentals of Chemistry 1B

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prerequisites: CHEM (1001 or 1101) or equivalent Prohibitions: CHEM1102, CHEM1108, CHEM1902, CHEM1904 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

CHEM1002 builds on CHEM1001 to provide a sound coverage of inorganic and organic chemistry. Lectures: A series of 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1101 Chemistry 1A

Credit points: 6 Session: Semester 1,Semester 2,Summer Main Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Corequisites: Recommended concurrent units of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1001, CHEM1109, CHEM1901, CHEM1903 Assumed knowledge: HSC Chemistry and Mathematics Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Chemistry 1A is built on a satisfactory prior knowledge of the HSC Chemistry course. A brief revision of basic concepts of the high school course is given. Chemistry 1A covers chemical theory and physical chemistry. Lectures: A series of 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1102 Chemistry 1B

Credit points: 6 Session: Semester 1,Semester 2,Summer Main Classes: One 3 hour lecture and 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prerequisites: CHEM (1101 or 1901) or a Distinction in CHEM1001 or equivalent Corequisites: Recommended concurrent units of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1002, CHEM1108, CHEM1902, CHEM1904 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Chemistry 1B is built on a satisfactory prior knowledge of Chemistry 1A and covers inorganic and organic chemistry. Successful completion of Chemistry 1B is an acceptable prerequisite for entry into Intermediate Chemistry units of study. Lectures: A series of 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1108 Chemistry 1A Life Sciences

Credit points: 6 Session: Semester 1 Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Corequisites: Recommended concurrent units of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1002, CHEM1102, CHEM1902, CHEM1904 Assumed knowledge: HSC Chemistry and Mathematics Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%). Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Note: This unit of study is available to students enrolled in the Bachelor of Medical Science, the Bachelor of Science (Molecular Biology and Genetics), the Bachelor of Science (Nutrition) and the Bachelor of Science (Molecular Biotechnology) only.

Lectures (39 hrs): A strong background in junior chemistry is essential for understanding molecular structures and processes. This unit of study provides the basis for understanding fundamental chemical processes and structures at an advanced level, with particular emphasis on how these apply to the life sciences. Topics to be covered include: atomic structure, chemical bonding and organic chemistry of functional groups with applications in life sciences.
Tutorials (12 hrs): These will provide aspects of problem solving relevant to the theory.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1109 Chemistry 1B Life Sciences

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prerequisites: CHEM1108 Corequisites: Recommended concurrent units of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1001, CHEM1101, CHEM1901, CHEM1903 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Lectures (39 hrs): A strong background in junior chemistry is essential for understanding molecular structures and processes. This unit of study provides the basis for understanding fundamental chemical processes and structures at an advanced level, with particular emphasis on how these apply to the life sciences. Topics to be covered include: chemical equilibria, solutions, acids and bases, ions in solution, redox reactions, colloids and surface chemistry, the biological periodic table, chemical kinetics and radiochemistry with applications to life sciences.
Tutorials (12 hrs): These will provide aspects of problem solving relevant to the unit of study.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1901 Chemistry 1A (Advanced)

Credit points: 6 Session: Semester 1 Classes: Three 1 hour lecture and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prerequisites: UAI of at least 96.4 and HSC Chemistry result in band 5 or 6, or Distinction or better in a University level Chemistry unit, or by invitation Corequisites: Recommended concurrent unit of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1001, CHEM1101, CHEM1109, CHEM1903 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Note: Department permission required for enrolment

Chemistry 1A (Advanced) is available to students with a very good HSC performance as well as a very good school record in chemistry or science. Students in this category are expected to do Chemistry 1A (Advanced) rather than Chemistry 1A.
The theory and practical work syllabuses for Chemistry 1A and Chemistry 1A (Advanced) are similar, though the level of treatment in the latter unit of study is more advanced, presupposing a very good grounding in the subject at secondary level. Chemistry 1A (Advanced) covers chemical theory and physical chemistry. Lectures: A series of about 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1902 Chemistry 1B (Advanced)

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour tutorial per week; one 3 hour practical per week for 10 weeks. Prerequisites: CHEM (1901 or 1903) or Distinction in CHEM1101 or equivalent Corequisites: Recommended concurrent unit of study: 6 credit points of Junior Mathematics Prohibitions: CHEM1002, CHEM1102, CHEM1108, CHEM1904 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%) Practical field work: A series of 10 three-hour laboratory sessions, one per week for 10 weeks of the semester.

Note: Department permission required for enrolment

Chemistry 1B (Advanced) is built on a satisfactory prior knowledge of Chemistry 1A (Advanced) and covers inorganic and organic chemistry. Successful completion of Chemistry 1B (Advanced) is an acceptable prerequisite for entry into Intermediate Chemistry units of study. Lectures: A series of about 39 lectures, three per week throughout the semester.

Textbooks

A booklist is contained in the booklet Junior Chemistry distributed at enrolment. Further information can be obtained from the School.

CHEM1903 Chemistry 1A (Special Studies Program)

Credit points: 6 Session: Semester 1 Classes: Three 1 hour lecture, one 1 hour tutorial per week and one 3 hour practical per week. Prerequisites: UAI of at least 98.7 and HSC Chemistry result in Band 6 Corequisites: Recommended concurrent unit of study: 6 credit points of Junior Mathematics. Prohibitions: CHEM1001, CHEM1101, CHEM1109, CHEM1901 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%)

Note: Department permission required for enrolment

Note: Entry is by invitation. This unit of study is deemed to be an Advanced unit of study.

Entry to Chemistry 1A (Special Studies Program) is restricted to students with an excellent school record in Chemistry. The practical work syllabus for Chemistry 1A (Special Studies Program) is very different from that for Chemistry 1A and Chemistry 1A (Advanced) and consists of special project-based laboratory exercises. All other unit of study details are the same as those for Chemistry 1A (Advanced). A Distinction in Chemistry 1A (Special Studies Program) is an acceptable prerequisite for entry into Chemistry 1B (Special Studies Program).

CHEM1904 Chemistry 1B (Special Studies Program)

Credit points: 6 Session: Semester 2 Classes: Three 1 hour lecture, one 1 hour tutorial per week and one 3 hour practical per week. Prerequisites: Distinction in CHEM1903 Corequisites: Recommended concurrent units of study: 6 credit points of Junior Mathematics. Prohibitions: CHEM1002, CHEM1102, CHEM1108, CHEM1902 Assessment: Theory examination (75%), laboratory exercises and continuous assessment quizzes (25%)

Note: Department permission required for enrolment

Note: Entry is by invitation. This unit of study is deemed to be an Advanced unit of study.

Entry to Chemistry 1B (Special Studies Program) is restricted to students who have gained a Distinction in Chemistry 1A (Special Studies Program). The practical work syllabus for Chemistry 1B (Special Studies Program) is very different from that for Chemistry 1B and Chemistry 1B (Advanced) and consists of special project-based laboratory exercises. All other unit of study details are the same as those for Chemistry 1B (Advanced) . Successful completion of Chemistry 1B (Special Studies Program) is an acceptable prerequisite for entry into Intermediate Chemistry units of study.

Intermediate units of study

The School of Chemistry offers a number of units of study to cater for the differing needs and interests of students. The following 6 credit point units of study are offered: CHEM2401 Molecular Reactivity and Spectroscopy, CHEM2402 Chemical Structure and Stability, CHEM2403 Chemistry of Biological Molecules, CHEM2404 Forensic and Environmental Chemistry, CHEM2911 Molecular Reactivity and Spectroscopy (Adv), CHEM2912 Chemical Structure and Stability (Adv), CHEM2915 Molecular Reactivity and Spectroscopy (SSP), CHEM2916 Chemical Structure and Stability (SSP). Note: The core Intermediate Chemistry units CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916) are prerequisites for all Senior Chemistry units of study. Students who wish to enrol in Senior Chemistry in 2010 must have completed both core units.

CHEM2401 Molecular Reactivity and Spectroscopy

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 1 Classes: Three 1 hour lectures per week, seven 1 hour tutorials per semester, eight 4 hour practicals per semester. Prerequisites: CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109), 6 credit points of Junior Mathematics Prohibitions: CHEM2001, CHEM2101, CHEM2301, CHEM2311, CHEM2502, CHEM2901, CHEM2903, CHEM2911, CHEM2915 Assessment: One 3 hour examination, quizzes, lab reports

Note: This is a required chemistry unit of study for students intending to major in chemistry.

This is one of the two core units of study for students considering majoring in chemistry, and for students of other disciplines who wish to acquire a good general background in chemistry. The unit considers fundamental questions of molecular structure, chemical reactivity, and molecular spectroscopy: What are chemical reactions and what makes them happen? How can we follow and understand them? How can we exploit them to make useful molecules? This course includes the organic and medicinal chemistry of aromatic compounds, organic reaction mechanisms, vibrational and electronic spectroscopy and their applications, quantum chemistry, and molecular orbital theory.

CHEM2911 Molecular Reactivity & Spectroscopy Adv

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 1 Classes: Three 1 hour lectures per week, seven 1 hour tutorials per semester and eight 4 hour practicals per semester. Prerequisites: Credit average or better in CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109). 6 credit points of Junior Mathematics. Prohibitions: CHEM2001, CHEM2101, CHEM2301, CHEM2311, CHEM2401, CHEM2502, CHEM2901, CHEM2903, CHEM2915 Assessment: One 3 hour examination, quizzes, lab reports.

The syllabus for this unit is the same as that of CHEM2401 together with special Advanced material presented in the theory and practical programs. The lectures cover fundamental consideration of molecular electronic structure and its role in molecular reactivity and spectroscopy and include applications of spectroscopy, the organic chemistry of aromatic systems, molecular orbital theory and quantum chemistry.

CHEM2915 Molecular Reactivity & Spectroscopy SSP

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 1 Classes: Three 1 hour lectures per week, twelve 1 hour SSP seminars per semester, eight 4 hour practicals per semester. Prerequisites: By invitation. High WAM and a Distinction average in CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109). 6 credit points of Junior Mathematics Prohibitions: CHEM2001, CHEM2101, CHEM2301, CHEM2311, CHEM2401, CHEM2502, CHEM2901, CHEM2903, CHEM2911 Assessment: One 3 hour examination, quizzes, assignments, lab reports.

Note: Department permission required for enrolment

Note: The number of places in this unit of study is strictly limited and entry is by invitation only. Enrolment is conditional upon available places.

The lectures for this unit comprise the lectures for CHEM2401 and the Advanced practical program together with additional SSP seminars. Two streams of SSP seminars are offered: Series One comprises three seminar series on state of the art topics in chemistry (in 2008, these covered Advanced Kinetics, Quantum Theory and Palladium in organic synthesis), Series Two is devoted to Advanced Theoretical Chemistry.

CHEM2402 Chemical Structure and Stability

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 2 Classes: Three 1 hour lectures per week, seven 1 hour tutorials per semester, eight 4 hour practicals per semester. Prerequisites: CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109), 6 credit points of Junior of Mathematics Prohibitions: CHEM2202, CHEM2302, CHEM2902, CHEM2912, CHEM2916 Assessment: One 3 hour examination, quizzes, lab reports

Note: This is a required chemistry unit of study for students intending to major in chemistry.

This is the second core unit of study for students considering majoring in chemistry, and for students seeking a good general background in chemistry. The unit continues the consideration of molecular structure and chemical reactivity. Topics include the structure and bonding of inorganic compounds, the properties of metal complexes, statistical thermodynamics, the organic chemistry of carbonyl compounds and organometallic reagents, and the art of synthesis.

CHEM2912 Chemical Structure and Stability (Adv)

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 2 Classes: Three 1 hour lectures per week, seven 1 hour tutorials per semester, eight 4 hour practicals per semester. Prerequisites: Credit average or better in CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109). 6 credit points of Junior Mathematics. Prohibitions: CHEM2202, CHEM2302, CHEM2402, CHEM2902, CHEM2916 Assessment: One 3 hour examination, quizzes, lab reports.

The syllabus for this unit is the same as that of CHEM2402 together with special Advanced material presented in the theory and practical programs. The lectures include the properties of inorganic compounds and complexes, statistical thermodynamics, the chemistry of carbonyls, nucleophilic organometallic reagents, and synthetic methods.

CHEM2916 Chemical Structure and Stability (SSP)

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 2 Classes: Three 1 hour lectures per week, twelve 1 hour SSP seminars per semester, eight 4 hour practicals per semester. Prerequisites: By invitation. High WAM and a Distinction average in CHEM (1101 or 1901 or 1903 or 1907 or 1908 or 1108) and CHEM (1102 or 1902 or 1904 or 1909 or 1109). 6 credit points of Junior Mathematics. Prohibitions: CHEM2202, CHEM2302, CHEM2402, CHEM2902, CHEM2912 Assessment: One 3 hour examination, quizzes, assignments, lab reports.

Note: Department permission required for enrolment

Note: The number of places in this unit of study is strictly limited and entry is by invitation only. Enrolment is conditional upon available places.

The lectures for this unit comprise the lectures for CHEM2402 and the Advanced practical program together with additional SSP seminars comprising three seminar series on state of the art topics in chemistry (in 2008, these covered carbon-rich chemistry, advanced theoretical chemistry and the chemistry of antibiotics).

CHEM2404 Forensic and Environmental Chemistry

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 1 Classes: Three 1 hour lectures per week, six 1 hour tutorials and five 4 hour practical sessions per semester. Prerequisites: 12 credit points of Junior Chemistry; 6 credit points of Junior Mathematics Prohibitions: CHEM3107, CHEM3197 Assessment: One 3 hour examination, quizzes, lab reports.

Note: To enrol in Senior Chemistry in 2010 students are required to have completed CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Students are advised that combinations of CHEM2 units that do not meet this requirement will generally not allow progression to Senior Chemistry.

The identification of chemical species and quantitative determination of how much of each species is present are the essential first steps in solving all chemical puzzles. In this course students learn analytical techniques and chemical problem solving in the context of forensic and environmental chemistry. The lectures on environmental chemistry will cover two main topics: atmospheric chemistry (covering air pollution, global warming and ozone depletion), and water and soil chemistry (including bio-geochemical cycling, chemical speciation, catalysis and green chemistry). The forensic component of the course examines the gathering and analysis of evidence, using a variety of chemical techniques, and the development of specialised forensic techniques in the analysis of trace evidence. Students will also study forensic analyses of inorganic, organic and biological materials (dust, soil, inks, paints, documents, etc.) in police, customs and insurance investigations and learn how a wide range of techniques are used to examine forensic evidence.

CHEM2403 Chemistry of Biological Molecules

Credit points: 6 Teacher/Coordinator: Dr P J Rutledge Session: Semester 2 Classes: Three 1 hour lectures per week, six 1 hour tutorials per semester, five 4 hour practical sessions per semester. Prerequisites: 12 credit points of Junior Chemistry; 6 credit points of Junior Mathematics Prohibitions: CHEM2001, CHEM2901, CHEM2311, CHEM2903, CHEM2913 Assessment: One 3 hour examination, quizzes, lab reports

Life is chemistry. This unit of study examines the key chemical processes that underlie all living systems. Lectures cover the chemistry of carbohydrates, lipids and DNA, the mechanisms of organic and biochemical reactions that occur in biological systems, chemical analysis of biological systems, the inorganic chemistry of metalloproteins, biomineralisation, biopolymers and biocolloids, and the application of spectroscopic techniques to biological systems. The practical course will include the chemical characterisation of biopolymers, experimental investigations of iron binding proteins, organic and inorganic chemical analysis, and the characterisation of anti-inflammatory drugs.

Senior units of study

The School of Chemistry offers a choice of 6 credit point units of study to cater for the differing needs and interests of students. Each unit involves two lectures and 4 hours of lab each week.

CHEM3110 Biomolecules: Properties and Reactions

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lecture and one 4 hour practical per week. Prerequisites: CHEM(2401 or 2911 or 2915) and CHEM(2402 or 2912 or 2916) Prohibitions: CHEM3910 Assessment: One 2 hour exam, prac reports

DNA, proteins and carbohydrates represent three classes of essential biomolecules present in all biological systems. This unit will cover the structure, reactivity and properties of biomolecules and the building blocks from which these molecules are assembled, their interactions with metal ions and small molecules, and highlight the chemical tools used to study the behaviour of biomolecules. The final section of the unit will illustrate how chemists apply the same principles used by nature in these systems to produce molecular sensors and switches for applications in medicine and industry.

CHEM3910 Biomolecules: Properties & Reactions Adv

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: WAM of 65 or greater and a Credit or better in: CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Prohibitions: CHEM3110 Assessment: One 2 hour exam, prac reports

CHEM3111 Organic Structure and Reactivity

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: CHEM(2401 or 2911 or 2915) and CHEM(2402 or 2912 or 2916) Prohibitions: CHEM3911 Assessment: One 2 hour exam, prac reports

The structure and shape of organic molecules determines their physical properties, their reaction chemistry as well as their biological/medicinal activity. The determination of this structure and understanding its chemical consequences is of fundamental importance in chemistry, biochemistry, medicinal and materials chemistry. This course examines the methods and techniques used to establish the structure of organic molecules as well as the chemistry which dictates the shapes that they adopt. The first part of the course examines the use of modern spectroscopic methods (nuclear magnetic resonance spectroscopy, infrared spectroscopy and mass spectroscopy) which are used routinely to identify organic compounds. The second part of the course examines the chemical consequences of molecular shapes in more depth and looks at how different molecular shapes arise as a consequence of the mechanism of chemical reactions used to synthesise them.

CHEM3911 Organic Structure and Reactivity (Adv)

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lectures and one 4 hour practicals per week. Prerequisites: WAM of 65 or greater and a Credit or better in: CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Prohibitions: CHEM3111 Assessment: One 2 hour exam, prac reports

CHEM3112 Materials Chemistry

Credit points: 6 Session: Semester 1 Classes: One 2 hour lecture and one 4 hour practical per week. Prerequisites: CHEM(2401 or 2911 or 2915) and CHEM(2402 or 2912 or 2916) Prohibitions: CHEM3912 Assessment: One 2 hour exam, prac reports

This course concerns the inorganic chemistry of solid-state materials: compounds that possess 'infinite' bonding networks. The extended structure of solid materials gives rise to a wide range of important chemical, mechanical, electrical, magnetic and optical properties. Consequently such materials are of enormous technological significance as well as fundamental curiosity. In this course you will learn how chemistry can be used to design and synthesise novel materials with desirable properties. The course will start with familiar molecules such as C60 and examine their solid states to understand how the nature of chemical bonding changes in the solid state, leading to new properties such as electronic conduction. This will be the basis for a broader examination of how chemistry is related to structure, and how structure is related to properties such as catalytic activity, mechanical strength, magnetism, and superconductivity. The symmetry of solids will be used explain how their structures are classified, how they can transform between related structures when external conditions such as temperature, pressure and electric field are changed, and how this can be exploited in technological applications such as sensors and switches. Key techniques used to characterise solid-state materials will be covered, particularly X-ray diffraction, microscopy, and physical property measurements.

CHEM3912 Materials Chemistry (Adv)

This course concerns the inorganic chemistry of solid-state materials: compounds that possess 'infinite' bonding networks. The extended structure of solid materials gives rise to a wide range of important chemical, mechanical, electrical, magnetic and optical properties. Consequently, such materials are of enormous technological significance as well as fundamental curiosity. In this course you will learn how chemistry can be used to design and synthesize novel materials with desirable properties. The course will start with familiar molecules such as C60 and examine their solid states to understand how the nature of chemical bonding changes in the solid state, leading to new properties such as electronic conduction. This will be the basis for a broader examination of how chemistry is related to structure, and how structure is related to properties such as catalytic activity, mechanical strength, magnetism, and superconductivity. The symmetry of solids will be used explain how their structures are classified, how they can transform between related structures when external conditions such as temperature, pressure and electric field are changed, and how this can be exploited in technological applications such as sensors and switches. Key techniques used to characterise solid-state materials will be covered, particularly X-ray diffraction, microscopy, and physical property measurements. CHEM3912 students attend the same lectures as CHEM3112 students, but attend an additional advanced seminar series comprising one lecture a week for 12 weeks.

CHEM3113 Catalysis and Sustainable Processes

Almost 90% of manufactured chemicals (from fuels through polymers to drugs) involve at least one catalytic step in their production. Catalysis by enzymes is fundamental to all chemical pathways in living things. This course provides the foundation for a molecular-scale understanding of even the most complex catalysts. It begins by showing how organometallic fundamentals can be used to understand and design transition-metal catalysts. Making use of these concepts, the chemistry involved in surface catalysts will be examined. The course will address two main applications of catalysis. Synthetic polymers (plastics, woven materials, films, coatings, etc.) are the most ubiquitous and diverse of modern materials. These are synthesized by a range of catalytic processes, whose chemistry will be described. It will be shown how the mechanisms of these reactions in turn control the molecular weights of the resulting polymers, as well as other aspects of molecular architecture such as degree of branching. The other major application is the use of porous solids (zeotypes) as acid/base and redox catalysts. Confinement-induced selectivity changes are discussed and related to similar phenomena in enzymatic catalysis. In both applications students will also examine the overall process and look at the reasons behind choice of product, catalyst and reaction design with a specific focus on economy and environmental sustainability.

CHEM3913 Catalysis and Sustainable Process (Adv)

Credit points: 6 Session: Semester 1 Classes: Two 1 hour lecture and one 4 hour practical per week. Prerequisites: WAM of 65 or greater and a Credit or better in: CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Prohibitions: CHEM3113 Assessment: One 2 hour exam, prac reports

Almost 90% of manufactured chemicals (from fuels through polymers to drugs) involve at least one catalytic step in their production. Catalysis by enzymes is fundamental to all chemical pathways in living things. This course provides the foundation for a molecular-scale understanding of even the most complex catalysts. It begins by showing how organometallic fundamentals can be used to understand and design transition-metal catalysts. Making use of these concepts, the chemistry involved in surface catalysts will be examined. The course will address two main applications of catalysis. Synthetic polymers (plastics, woven materials, films, coatings, etc.) are the most ubiquitous and diverse of modern materials. There are synthesized by a range of catalytic processes, whose chemistry will be described. It will be shown how the mechanisms of these reactions in turn control the molecular weights of the resulting polymers, as well as other aspects of molecular architecture such as degree of branching. The other major application is the use of porous solids (zeotypes) as acid/base and redox catalysts. Confinement-induced selectivity changes are discussed and related to similar phenomena in enzymatic catalysis. In both applications students will also examine the overall process and look at the reasons behind choice of product, catalyst and reaction design with a specific focus on economy and environmental sustainability. CHEM3913 students attend the same lectures as CHEM3113 students, but attend an additional advanced seminar series comprising one lecture a week for 12 weeks.

CHEM3114 Metal Complexes: Medicine and Materials

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: CHEM(2401 or 2911 or 2915) and CHEM(2402 or 2912 or 2916) Prohibitions: CHEM3914 Assessment: One 2 hour exam, prac reports

Coordination compounds, with bonds between a central metal atom and surrounding ligands, play critical roles in biology, biochemistry and medicine, controlling the structure and function of many enzymes and their metabolism. They play similarly vital roles in many industrial processes and in the development of new materials with specifically designed properties. Building on the foundation of crystal field theory, this course offers a comprehensive treatment of the structures and properties of coordination compounds, with a qualitative molecular orbital description of metal-ligand bonds, and their spectroscopic, magnetic and dynamic effects. The exploitation of these properties in medicine and materials will be emphasized.

CHEM3914 Metal Complexes: Medic. & Mater. (Adv)

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lectures and one 4 hour practical per week. Prerequisites: WAM of 65 or greater and a Credit or better in: CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Prohibitions: CHEM3114 Assessment: One 2 hour exam, prac reports

CHEM3115 Synthetic Medicinal Chemistry

The development of new pharmaceuticals fundamentally relies on the ability to design and synthesize new compounds. Synthesis is an enabling discipline for medicinal chemistry - without it, the development of new drugs cannot progress from design to implementation, and ultimately to a cure. This unit will tackle important factors in drug design, and will highlight the current arsenal of methods used in the discovery of new drugs, including rational drug design, high throughput screening and combinatorial chemistry. We will develop a logical approach to planning a synthesis of a particular target structure. The synthesis and chemistry of heterocycles, which comprise some 40% of all known organic compounds and are particularly common in pharmaceuticals, will be outlined. Examples will include important ring systems present in biological systems, such as pyrimidines and purines (DNA and RNA), imidazole and thiazole (amino acids and vitamins) and porphyrins (natural colouring substances and oxygen carrying component of blood). Throughout the course, the utility of synthesis in medicinal chemistry will be illustrated with case studies such as anti-influenza (Relenza), anaesthetic (benzocaine), anti-inflammatory (Vioxx), antihypertensive (pinacidil) and cholesterol-lowering (Lovastatin) drugs.

CHEM3915 Synthetic Medicinal Chemistry (Adv)

CHEM3116 Membranes, Self Assembly and Surfaces

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lecture and one 4 hour practical per week. Prerequisites: CHEM(2401 or 2911 or 2915) and CHEM(2402 or 2912 or 2916) Prohibitions: CHEM3916 Assessment: One 2 hour exam, prac reports

Away from the covalent and ionic interactions that hold molecules and solids together is the world of fragile objects - folded polymers, membranes, surface adsorption and stable molecular aggregates - held together by weak forces such as van der Waals and the hydrophobic effect. The use of molecules rather than atoms as building blocks means that there are an enormous number of possibilities for stable aggregates with interesting chemical, physical and biological properties, many of which still wait to be explored. In this course we will examine the molecular interactions that drive self assembly and the consequences of these interactions in supramolecular assembly, lipid membrane formations and properties, microemulsions, polymer conformation and dynamics and range of fundamental surface properties including adhesion, wetting and colloidal stability.

CHEM3916 Membranes, Self Assembly & Surfaces(Adv)

Away from the covalent and ionic interactions that hold molecules and solids together is the world of fragile objects - folded polymers, membranes, surface adsorption and stable molecular aggregates - held together by weak forces such as van der Waals and the hydrophobic effect. The use of molecules rather than atoms as building blocks means that there are an enormous number of possibilities for stable aggregates with interesting chemical, physical and biological properties, many of which still wait to be explored. In this course we examine the molecular interactions that drive self assembly and the consequences of these interactions in supramolecular assembly, lipid membrane formations and properties, microemulsions, polymer conformation and dynamics and range of fundamental surface properties including adhesion, wetting and colloidal stability. CHEM3916 students attend the same lectures as CHEM3916 students, but attend an additional advanced seminar series comprising one lecture a week for 12 weeks.

CHEM3117 Molecular Spectroscopy & Quantum Theory

This course will cover the fundamentals of molecular spectroscopy as a modern research tool and as a theoretical basis with which to understand everyday phenomena. This course is aimed at students who wish to acquire a rigorous understanding of the interaction between light and matter. The course teaches the quantum theory needed to understand spectroscopic phenomena (such as the absorption of light) without the need for difficult mathematics. This low level theory is used as a tool with which to understand models of everyday phenomena. The course teaches application and theory, with descriptions of applied spectroscopic techniques. Alongside the coverage of modern spectroscopy, the course provides an accessible treatment of the science behind vision, flames, solar cells and photochemical smog.

CHEM3917 Mol. Spectroscopy & Quantum Theory (Adv)

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lecture and one 4 hour practical per week. Prerequisites: WAM of 65 or greater and a Credit or better in: CHEM (2401 or 2911 or 2915) and CHEM (2402 or 2912 or 2916). Prohibitions: CHEM3117 Assessment: One 2 hour exam, prac reports

Chemistry Honours

The honours program in the School of Chemistry gives students the opportunity to get involved in a research program in an area that is of interest to them. It provides training in research techniques and experience using modern research instrumentation. The honours program adds a new dimension to the skills that the students have acquired during their undergraduate years and enhances their immediate employment prospects and, more significantly, their future career potential. All students with a sound record in Chemistry are encouraged to apply for entry to the honours program. The School of Chemistry offers a wide range of possible projects in all areas of contemporary chemistry including Biological and Medicinal Chemistry, Synthesis and Catalysis, Physical and Theoretical Chemistry, Supramolecular Chemistry, Polymers and Colloids and Chemical Spectroscopy. Details of available projects are contained in the School's Honours Booklet that is available from the School's Information Desk. In the honours year, each student undertakes a research project under the supervision of a member of staff; writes a thesis which explains the problem; outlines the research undertaken and the results obtained; attends advanced lecture courses, normally given by leaders in their field from overseas or Australia; attends research seminars and undertakes additional written assessment. Further information is available from the Honours Coordinator, or at www.chem.usyd.edu.au/future/honours.html.

Civil Engineering

The School of Civil Engineering is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in this branch of engineering it offers units of study to students enrolled in the Faculty of Science majoring in Mathematics, Physics, Chemistry, Geology, Computer Science or Soil Science. The most relevant units of study are CIVL2201 - Structural Mechanics, CIVL2230 - Introduction to Structural Concepts and Design, CIVL2410 Soil Mechanics, and CIVL2611 Fluid Mechanics. Details regarding these units of study can be obtained from the Faculty of Engineering and Information Technologies Handbook. These units of study are intended first to demonstrate the application of scientific principles in an engineering context. The second intention is to introduce the application of this understanding to analysis and design in civil engineering. As well as the above units of study, Faculty of Science students are invited to enrol in other civil engineering units of study, provided they have the appropriate pre-requisites and assumed knowledge.

Double Degree

BSc graduates, who have passed all four of the above four units of study within the School of Civil Engineering, may obtain a Bachelor of Engineering degree in Civil Engineering after an additional two years' study, following the award of the BSc. Students wishing to undertake this option must apply through UAC and compete on the basis of academic merit. Prospective students are advised to discuss their plans with the School of Civil Engineering before enrolment. Further details regarding admission to the BE in Civil Engineering may be obtained from the Engineering Faculty Office in the Engineering and Information Technologies Faculty Building.

Computational Science

Coordinator

Dr Mike Wheatland

Junior units of study

COSC1001 Computational Science in Matlab

Credit points: 3 Session: Semester 2 Classes: One 1 hour lecture and one 2 hour practical per week. Prohibitions: COSC1901 Assumed knowledge: HSC Mathematics Assessment: One assignment, practical work, including practical exams, theory exam.

This unit of study focuses on scientific problem solving and data visualisation using computers and is complementary to COSC1002. Students will learn how to solve problems arising in the natural sciences and mathematics using core features of the problem solving environment MATLAB, with a choice of problems from various areas of science at each stage. Emphasis will be placed on graphical display and visualisation of data and solutions to problems. No previous knowledge of programming is assumed.

COSC1901 Computational Science in Matlab (Adv)

Credit points: 3 Session: Semester 2 Classes: One 1 hour lecture and one 2 hour practical per week. Prerequisites: UAI of at least 90, or COSC1902, or a distinction or better in COSC1002, SOFT (1001, 1002, 1901 or 1902). Prohibitions: COSC1001 Assumed knowledge: HSC Mathematics Assessment: One assignment, practical work, including practical exams, theory exam.

This unit of study is the advanced version of COSC1001 and is complementary to COSC1902. The subject matter is very similar but more challenging problems will be covered and some additional programming and visualisation techniques will be used.

COSC1002 Computational Science in C

Credit points: 3 Session: Semester 2 Classes: One 1 hour lecture and one 2 hour practical per week. Prohibitions: COSC1902 Assumed knowledge: HSC Mathematics Assessment: One assignment, practical work, including practical exams, theory exam.

This unit of study focuses on scientific problem-solving using computers and is complementary to COSC1001. Students will learn how to solve problems arising in the natural sciences and mathematics using core features of the language C, with a choice of problems from various areas of science at each stage. No previous knowledge of programming is assumed.

COSC1902 Computational Science in C (Adv)

Credit points: 3 Session: Semester 2 Classes: One 1 hour lecture and one 2 hour practical per week. Prerequisites: UAI of at least 90, or COSC1901, or a distinction or better in COSC1001, SOFT (1001, 1002, 1901 or 1902). Prohibitions: COSC1002 Assumed knowledge: HSC Mathematics Assessment: One assignment, practical work, including practical exams, theory exam.

This unit of study is the advanced version of COSC1002 and is complementary to COSC1901. The subject matter is very similar, but more challenging problems will be covered and some additional programming techniques will be used.

Senior units of study

For a major in Computational Science, the minimum requirement is 24 credit points chosen from the core or elective senior units of study listed for this subject area, of which at least 12 credit points must be from the following core senior units of study: COSC3011 Scientific Computing; COSC3911 Scientific Computing (Advanced); MATH3076 Mathematical Computing*; MATH3976 Mathematical Computing (Advanced)*. For Senior elective units see Table 1.

Notes

* Refer to Mathematics listing in this chapter for descriptions of these units of study. Senior elective units of study for a major in Computational Science are listed in Table 1 in chapter 3.

COSC3011 Scientific Computing

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: 12 credit points chosen from Junior Mathematics and Statistics, 12 credit points of Intermediate units in Science subject areas. Prohibitions: COSC3911, COSC3001, COSC3901, PHYS3301, PHYS3901 Assumed knowledge: Programming experience in MATLAB Assessment: Assignments, lab, project work and written exam

This unit of study provides a senior-level treatment of scientific problem solving using computers. Students will understand and apply a wide range of numerical schemes for solving ordinary and partial differential equations. Linear algebra is used to provide detailed insight into stability analysis, relaxation methods, and implicit integration. A variety of scientific problems are considered, including planetary motion, population demographics, heat diffusion, traffic flow and quantum mechanics. All coding is performed with MATLAB, and basic programming experience is assumed.

Textbooks

Garcia, AL. Numerical Methods for Physics, 2nd Edition.

COSC3911 Scientific Computing (Advanced)

Credit points: 6 Session: Semester 2 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: 12 credit points chosen from Junior Mathematics and Statistics, 12 credit points of Intermediate units in Science subject areas with a credit average. Prohibitions: COSC3011, COSC3001, COSC3901, PHYS3301, PHYS3901 Assumed knowledge: Programming experience in MATLAB Assessment: Assignments, lab, project work and written exam

This unit is the Advanced version of COSC3011. The subject matter is very similar, but more challenging problems will be covered.

Textbooks

Garcia, AL. Numerical Methods for Physics, 2nd Edition.

MATH3076 Mathematical Computing

Credit points: 6 Teacher/Coordinator: Dr D J Ivers Session: Semester 1 Classes: Three 1 hour lectures and one 1 hour laboratory per week. Prerequisites: 12 credit points of Intermediate Mathematics and one of MATH(1001 or 1003 or 1901 or 1903 or 1906 or 1907) Prohibitions: MATH3976, MATH3016, MATH3916 Assessment: One 2 hour exam, assignments, quizzes

This unit of study provides an introduction to Fortran 95 programming and numerical methods. Topics covered include computer arithmetic and computational errors, systems of linear equations, interpolation and approximation, solution of nonlinear equations, quadrature, initial value problems for ordinary differential equations and boundary value problems.

MATH3976 Mathematical Computing (Advanced)

Credit points: 6 Teacher/Coordinator: Dr D J Ivers Session: Semester 1 Classes: Three 1 hour lectures and one 1 hour tutorial per week. Prerequisites: 12 credit points of Intermediate Mathematics and one of MATH(1903 or 1907) or Credit in MATH1003 Prohibitions: MATH3076, MATH3016, MATH3916 Assessment: One 2 hour exam, assignments, quizzes

See entry for MATH3076 Mathematical Computing.

Electrical Engineering

The School of Electrical and Information Engineering is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in this branch of engineering it offers many units of study that are available to students enrolled in the Faculty of Science. Details regarding these units of study can be obtained from the Faculty of Engineering and Information Technologies Handbook or from the school website: www.ee.usyd.edu.au/ugrad

Double Degree

Science graduates may obtain up to two years advanced standing towards a Bachelor of Engineering degree in Computer, Electrical, Software or Telecommunications Engineering. Students wishing to undertake this option must seek academic advice from the School of Electrical and Information Engineering. Further details regarding admission to the BE may be obtained from the Engineering and Information Technologies Faculty Office. The School of Engineering is located in Building J03.

Environmental Science

Environmental Science is an applied interdisciplinary field concerned with the environment around us, regardless of whether it is natural or human-made, and how we can utilize or manage it for our benefit. It draws on a wide range of science-based disciplines and applications, from ecology to solar power, analytical chemistry to geomorphology. Environmental Science is also concerned with the social issues involved, including environmental law and policy, sustainability, resource economics, urban planning, and environmental ethics. Environmental scientists and managers need to have a broad knowledge base and the ability to be flexible and innovative in their application of such knowledge. Consequently, the emphasis of the Environmental Science program is placed upon studies that span and integrate several disciplines, involve adaptive problem solving, and develop new skills and expertise. In particular, the Environmental Science program looks to supplement studies in the science disciplines with units that provide complimentary information on environmental issues that not only show how the sciences interact in the environment but how humans impact upon it. Prior to 2007, students wanting to Study Environmental Science did so through the specialist BSc (Environmental) degree - see Table 1B. Now students wanting to take Environmental Science can only do so by taking a double major in the BSc, one major in Environmental Studies and the other in a Science discipline of the students' choice. For descriptions of the ENVI units of study, refer to the entries under Environmental Studies.

Honours in the Bachelor of Science (Environmental)

Students of sufficient merit may be admitted to an Honours course in the Bachelor of Science (Environmental). In the Honours year, a student will undertake an interdisciplinary research exercise in association with one or more supervising members of the academic staff at the University of Sydney, write a thesis based upon the research, and attend advanced lecture units of study and seminars as required by their supervisor(s). The honours year is not only rewarding but enjoyable as well, and marks the transition period where a student becomes a research collaborator. Eligible students can choose to complete Honours in the following Science Subject Areas: Agricultural Chemistry, Biology, Chemistry, Geography, Geology, Marine Science, Microbiology, or Soil Science. (Please note that there are no honours units of study entitled 'Environmental Science').

Environmental Studies

Environmental Studies is the examination of the human interactions with the natural and built environment. It encapsulates the fundamental social aspects of sustainability, environmental impact, law, ethics, development, energy use, economics and politics. In order to properly cover this material, the ENVI units are taught by various staff from within the Faculties of Science, Architecture and Law. Consequently, the ENVI units are complimentary to studies not only in the physical and natural Science disciplines but also to the social disciplines.

Obtaining a major in Environmental studies

A major in Environmental Studies constitutes the completion of 24 credit points of Senior units as listed in Table 1, including at least 12 credit points of Senior ENVI units of study listed below. Study of at least one Intermediate ENVI unit is highly recommended.

ENVI2111 Conservation Biology and Applied Ecology

Credit points: 6 Teacher/Coordinator: Dr C Taylor Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week, plus one 2 day field trip during the semester. Prerequisites: 24 credit points of Junior Science units, including 12 credit points of Junior Biology (BIOL/MBLG/EDUH). Prohibitions: ENVI2911, ENVI2001. Assessment: Essays, tutorial papers, exam.

This topic examines the role of conservation biology and applied ecology in environmental science, examining pattern and process in natural systems and evaluating how these are being affected by pervasive anthropogenic impacts. Focusing on the conservation, assessment of impacts and the restoration of natural systems, we consider the range of ecological issues environmental scientists must address. We examine the extent of environmental problems; derive explanations of why and how they are occurring and address management options for resolving them. We will derive general principles for these by addressing case studies, chosen from Australian examples when possible. The aim of this unit is for you to understand the processes that go into solving environmental problems from an ecological perspective and how to identify management options.

ENVI2911 Conservation Biology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Charlotte Taylor Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week, plus one 2 day field trip during the semester. Prerequisites: Distinction average in BIOL (1001 or 1911 or 1101 or 1901) and 6 additional credit points of Junior Biology (BIOL/MBLG/EDUH). 12 credit points of Junior Chemistry (or for BSc (Marine Science) students 6 credit points of Junior Chemistry and 6 credit points of Junior Physics). These requirements may be varied and students with lower averages should consult the Unit Executive Officer. Prohibitions: ENVI2111, ENVI2001. Assessment: One 2 hour exam, field report, briefing paper, oral presentation.

Qualified students will participate in alternative components of ENVI2111, Conservation Biology, including an independent reseach project.

Textbooks

Caughley G, Gunn. 1996. Conservation Biology in Theory and Practice, Blackwell, Oxford.

ENVI2112 Atmospheric Processes and Climate

Credit points: 6 Teacher/Coordinator: Edwina Tanner Session: Semester 2 Classes: Three 1 hour lectures and one 2 hour practical per week. Prerequisites: 24 credit points of Junior Science units, including 12 credit points of Junior Chemistry or Physics Prohibitions: ENVI2002 Assessment: Assignments, tutorial papers, exam

This unit of study investigates the physical and chemical characteristics of our atmosphere, as well as the natural processes that occur within it and how these contribute to the climate we live in. Topics such as atmospheric structure, photochemical processes, and weather will be examined. The effects of ocean circulation are investigated, particularly examining the ocean's importance as a source/sink for atmospheric constituents and as a heat regulator. The impact of glaciation is also examined, including sources, quantity, magnitude of threat, and the potential impact to our climate, are then explored. Finally, the unit examines issues surrounding climate change and the modelling of these changes.

ENVI3111 Environmental Law and Ethics

Credit points: 6 Teacher/Coordinator: Dr Gerry Bates Dr Jane Johnson Session: Semester 1 Classes: Two 2 hour lectures per week. Prerequisites: 12 credit points of Intermediate Science or Agriculture units. Prohibitions: ENVI3001, ENVI3003. Assumed knowledge: Intermediate Environmental Science. Assessment: Essays, tutorial papers.

This unit of study covers topics in environmental law and ethics. The environmental law component provides an overview of all laws in Australia pertaining to environmental matters and looks at a number of environmental issues at the various levels of analysis, policy making, implementation of policy, enforcement, and dispute resolution. It also provides a broad background to the political and economical issues as they relate to the legal issues involved. It also examines international environmental law, particularly examining how these influence and affect our local policies. The ethics component helps students develop thoughtful and informed positions on issues in environmental ethics using arguments derived from traditional ethics as well as environmentally specific theories. Ethical conflicts are often inevitable and difficult to resolve but using the resources of philosophical ethics and regular reference to case studies, students can learn to recognize the values and considerations at stake in such conflicts, acknowledge differing viewpoints and defend their own well considered positions.

ENVI3112 Environmental Assessment

Credit points: 6 Teacher/Coordinator: Dr John Dee Dr Scott Kable Session: Semester 2 Classes: Two 2 hour lectures per week. Prerequisites: 12 credit points of Intermediate Science or Agriculture units. Prohibitions: ENVI3002, ENVI3004. Assumed knowledge: Intermediate Environmental Science. Assessment: Essays, tutorial papers, report.

This unit of study is composed of two components: environmental impact assessment and risk assessment. The former is generally concerned with issues related to environmental impact assessment and builds toward the process of producing an EIS/EIA. Moor specifically it seeks to establish a critical understanding of the theory and practice of environmental impact studies/statements (EIS) and environmental impact assessment processes (EIA) from both the positive (scientific) and normative (value) perspectives. Emphasis is placed on gaining skills in writing and producing an assessment report, which contains logically ordered and tightly structured argumentation that can stand rigorous scrutiny by political processes, the judiciary, the public and the media. The risk assessment component considers a more chemical approach to the assessment of risk and issues of safety with respect to chemicals, ecotoxicology and the environment.

ENVI3114 Energy and the Environment

Credit points: 6 Teacher/Coordinator: Dr Chris Dey Session: Semester 2 Classes: Two 1 hour lectures and one 1 hour tutorial per week and three field trips. Prerequisites: 12 credit points of Intermediate Science or Agriculture units. Prohibitions: ENVI3001, PHYS3600. Assumed knowledge: Junior Physics or Intermediate Environmental Science. Assessment: Essays, tutorial papers, field reports, exam.

This unit covers the following aspects of energy and the environment: energy use; electrical power generation including alternate methods such as wind turbines; the environmental impact of energy use and power generation including the enhanced greenhouse effect; transportation and pollution; energy management in buildings; solar thermal energy, photovoltaics, and nuclear energy; and, socio-economic and political issues related to energy use and power generation.

GEOS3513 Regional Development and Environment

Credit points: 6 Teacher/Coordinator: Dr Bill Pritchard; Dr Timohir Ancev Session: Semester 1 Classes: 2 hours of lectures per week and 2 hours of tutorials/practicals per week Prerequisites: 24 credit points of intermediate and/or senior units of study including 6 credit points of Intermediate units of study in Geography. Prohibitions: ENVI3113, GEOS3511, GEOS3911, GEOS3913 Assessment: Two in-class tests, one 1,500 word essay, one GIS report

This unit of study acquaints students with debates and tools associated with regional development and the economic analysis of environmental issues. It provides a useful preparation for professional employment in the field of regional development, environmental policy and management, and is relevant for students interested in economic and social issues in regional Australia. Co-taught be a geographer and an economist, the unit addresses four key areas of relevance: (i) regional development theory and practice; (ii) the economics of efficiently utilising and managing the environment; (iii) debates on regional development in Australia (including consideration of the farm sector, Indigenous communities and environmental sustainability), and (iv) the use of GIS to analyse population census date. The unit requires no prior knowledge of economic theory or GIS software.

GEOS3913 Regional Development & Environment (Adv)

Credit points: 6 Teacher/Coordinator: Dr Bill Pritchard, Dr Timohir Ancev Session: Semester 1 Classes: 2 hours of lectures per week and 2 hours of tutorials/practicals per week. Prerequisites: 24 credit points of intermediate and/or senior units of study including 6 credit points of intermediate units of study in Geography with a grade of Credit or better Prohibitions: ENVI3113, GEOS3513, GEOS3911 Assessment: In-class tests, essay, report

This unit of study is a more advanced version of GEOS3513. It includes more challenging assessment tasks.

Financial Mathematics and Statistics

This is an interdisciplinary major offered in the Faculty of Science consisting of several core units and a number of elective units from mathematics, statistics and information technologies. The program is designed to meet the need for high level quantitative and modelling skills in the banking, insurance, stockbroking and finance industries without constraining students to a full major in mathematics or statistics. Graduates with specifically strong mathematical and statistics backgrounds are in very high demand. The core units Optimisation and Financial Mathematics (MATH2070/2970) and Financial Mathematics (MATH3075/3975) are the backbone of the program and introduce the student to important financial concepts within a mathematical and statistical framework. The core mathematics and statistics units provide the technical base that is required by a quantitative analyst, while the elective units offer the student increased flexibility and additional opportunities to develop related skills. Students completing the program at the Advanced Level may continue into Fourth Year Honours where a number of further Financial Mathematics and Statistics units are on offer. It is envisaged that students completing the Honours program will not only be highly trained in quantitative finance, but will also be well prepared for active research in the field. Students should refer to Table 1 for an enrolment guide and to entries under the contributing Schools for unit of study descriptions.

Geosciences

The School of Geosciences offers units of study in the discipline areas of Geography and Geology and Geophysics. Students may take a major in either of these disciplines, and many of the Geoscience units also form key components of the Environmental Studies and Marine Science majors. The junior units GEOS1001, GEOS1002 and GEOS1003 provide a comprehensive introduction to both Geography and Geology and Geophysics. A major in Geography or Geology and Geophysics can be included within various degree programs across the University, including Science, Arts, Liberal Studies, Economics and Social Sciences.

Geography

Geography is the study of earth as the home of people. As the need to find solutions to issues of environmental sustainability, population change and globalisation have become more challenging, the skills and knowledge of geographers have come to the forefront. Students of Geography are interested in their world, and are taught to think critically about the relationships between people, environments and places. The knowledge and skills gained from studying Geography at the University of Sydney provide a launch pad to a professional career in an array of fields including environmental management, planning, overseas development and consulting research. Our Geography program has strong linkages with various national and international organizations that provide pathways for further studies at Honours and post-graduate levels, and into the work force. It differs from High School Geography in that it provides more opportunities for independent learning, introduces new techniques and skills, offers flexibility for you to follow your interests and is tailored to real world events and issues.

Geology and Geophysics

Geology and Geophysics provides a unifying context for understanding the workings of the earth system and the dynamic structural and ecosystem relationships between the continents and the oceans. Global climate change and shrinking resources have heightened our sense of dependence on Earth as a complex system. Geology and Geophysics provides students with an understanding of change on Earth, its origin, plate tectonics, surface processes, evolution of life and geologic time. Intermediate units highlight the role of the earth system in all natural phenomena, including those of concern to humans such as geo-biodiversity, salinity, seismicity, volcanic hazards, climate and sea level change. Senior units of study cover methods of field data collection and provide access to cutting edge computing and data resources used for turning such observations into knowledge. Students will acquire the skills necessary for employment in all areas of sustainable exploration and management of our natural, mineral and energy resources.

Geosciences Advice

As a Geoscience student at the University of Sydney, you will participate in an array of learning environments that complement traditional lecture and tutorial classes; for example, studies can include field trips to destinations in Australia and overseas. Students who wish to obtain advice concerning the units of study described below should approach School advisors during the enrolment week or the unit coordinators during semester. Further information is available at www.geosci.usyd.edu.au, as well as in the Geosciences' student handbook available from the School's administrative office (Room 348, Madsen Building).

Website

The School of Geosciences website is: www.geosci.usyd.edu.au.

Location

The School of Geosciences is located in the Madsen Building (F09). All student enquiries can be made at the Madsen Building, Room 348 - 9 am to 4.30pm, Mon to Fri.

Further information

Further information is available at www.geosci.usyd.edu.au, as well as in the Geosciences' student handbook available from the School's administrative office.

Geosciences junior units of study

Students are encouraged to commence their studies of Geography, Geology and Geophysics, Environmental Studies or Marine Science by enrolling in GEOS1001 (Earth, Environment and Society) (February semester). This unit of study provides an overarching introduction to issues and themes taught across the School of Geosciences. In the second (July) semester, Geography students should enroll in GEOS1002 (Introductory Geography); Geology and Geophysics students need to enroll in GEOS1003 (Introduction to Geology). Entry into any of these units of study does not require any prior knowledge

GEOS1001 Earth, Environment and Society

Credit points: 6 Teacher/Coordinator: Dr Mel Neave, Dr Bill Pritchard, Ms Edwina Tanner Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week. Prohibitions: GEOS1901, GEOG1001, GEOG1002, GEOL1001, GEOL1002, GEOL1902 Assessment: One 2 hour exam, 2000 word essay, field and prac reports

This is the gateway unit of study for Human Geography, Physical Geography and Geology. Its objective is to introduce the big questions relating to the origins and current state of the planet: climate change, environment, landscape formation, and the growth of the human population. During the semester you will be introduced to knowledge, theories and debates about how the world's physical and human systems operate. The first module investigates the system of global environmental change, specifically addressing climate variability and human impacts on the natural environment. The second module presents Earth as an evolving and dynamic planet, investigating how changes take place, the rate at which they occur and how they have the potential to dramatically affect the way we live. Finally, the third module, focuses on human-induced challenges to Earth's future. This part of the unit critically analyses the relationships between people and their environments, with central consideration to debates on population change and resource use.

GEOS1002 Introductory Geography

Credit points: 6 Teacher/Coordinator: Dr Mel Neave, Dr Kurt Iveson Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prohibitions: GEOS1902, GEOG1001, GEOG1002 Assessment: One 2 hour exam, one 2000 word essay, five practical reports

This unit of study provides an introduction to the ways that human and physical landscapes are produced. It begins with an investigation of Earth's surface features, exploring the distribution of landforms across Earth and interpreting their evolutionary histories. Several landscapes will be examined including those formed by rivers, wind, oceans and glaciers. But physical landscapes evolve under the influence of and affect human operations. Therefore, the unit of study will also consider the political, economic, cultural and urban geographies which shape contemporary global society. Each of these themes will be discussed with reference to key examples, in order to consider the ways in which the various processes (both physical and human) interact in the shaping of places. The unit of study will also include short field trips to localities surrounding the university to observe processes of spatial change and conflict. The unit of study is designed to attract and interest students who wish to pursue geography as a major within their undergraduate degree, but also has relevance to students who wish to consider the way geographers understand the contemporary world.

GEOS1003 Introduction to Geology

Credit points: 6 Teacher/Coordinator: Dr Tom Hubble, A/Prof Clarke Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour practical per week. Prohibitions: GEOS1903, GEOL1002, GEOL1902 Assessment: One 2 hour exam, practical reports, field report

The aim of this unit of study is to examine the chemical and physical processes involved in mineral formation, the interior of the Earth, surface features, sedimentary environments, volcanoes, and metamorphism. Lectures and laboratory sessions on mountain building processes and the formation of mineral deposits will lead to an understanding of the forces controlling the geology of our planet. Processes such as weathering, erosion and nature of sedimentary environments are related to the origin of the Australian landscape. In addition to laboratory classes there is a two-day excursion to the western Blue Mountains and Lithgow to examine geological objects in their setting.

Textbooks

The recommended text is Hamblin & Christiansen. Earth's Dynamic Systems. 9th Edition. Prentice Hall. 2001.

GEOL1501 Engineering Geology 1

Credit points: 6 Teacher/Coordinator: Dr Tom Hubble Session: Semester 2 Classes: 39 hours lectures, 26 hours laboratory. Field excursions in the Sydney region, as appropriate. Prohibitions: GEOL1002, GEOL1902, GEOS1003, GEOS1903 Assumed knowledge: No previous knowledge of Geology assumed Assessment: Practical laboratory work, assignment, and a combined theory and practical exam.

Course objectives: To introduce basic geology to civil engineering students.
Expected outcomes: Students should develop an appreciation of geologic processes as they influence civil engineering works and acquire knowledge of the most important rocks and minerals and be able to identify them.
Syllabus summary: Geological concepts relevant to civil engineering and the building environment. Introduction to minerals; igneous, sedimentary and metamorphic rocks, their occurrence, formation and significance. General introduction to physical geology and geomorphology, structural geology, plate tectonics, and hydrogeology. Associated laboratory work on minerals, rocks and mapping.

Textbooks

Approved readings will be provided via WebCT

GEOS1901 Earth, Environment and Society Advanced

Credit points: 6 Teacher/Coordinator: Dr Mel Neave, Dr Bill Pritchard, Ms Edwina Tanner Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: Departmental permission is required for enrolment. A UAI above 93 is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator. Prohibitions: GEOS1001, GEOG1001, GEOG1002, GEOL1001, GEOL1002, GEOL1902 Assessment: One 2 hour exam, 2000 word essay, field and prac reports

Note: Department permission required for enrolment

Advanced students will complete the same core lecture material as for GEOS1001, but will be required to carry out more challenging practical assignments.

GEOS1902 Introductory Geography (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Mel Neave, Dr Kurt Iveson Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practica per week. Prerequisites: Departmental permission is required for enrolment. A UAI above 93 is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator. Prohibitions: GEOS1002, GEOG1001, GEOG1002 Assessment: One 2 hour exam, one 2000 word essay, five practical reports

Note: Department permission required for enrolment

Advanced students will complete the same core lecture material as for GEOS1002, but will be required to carry out more challenging practical assignments.

GEOS1903 Introduction to Geology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Tom Hubble, A/Prof Geoff Clarke Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour practical per week. Prerequisites: Departmental permission is required for enrolment. A UAI above 93 is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator. Prohibitions: GEOL1002, GEOL1902, GEOS1003 Assessment: One 2 hour exam, practical reports, field report

Note: Department permission required for enrolment

This unit has the same objectives as GEOS1003 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. This unit may be taken as part of the BSc (Advanced).

Geosciences intermediate units of study

Geoscience intermediate units of study are listed below. All intermediate students are encouraged to enroll in GEOS2111 (Natural Hazards: a GIS Approach) which covers concepts and skills relevant to all Geoscience disciplines. Students interested in different areas of the Geoscience disciplines might select intermediate units of study as follows: physical and environmental Geography: GEOS2111 and/or GEOS2113 (Feb semester); GEOS2121 and/or GEOG2321 (July semester), human and environmental Geography: GEOS2112 and/or GEOS2111 (Feb semester); GEOS2122 and/or GEOS2121 (July semester), Geology and Geophysics: GEOS2111, GEOL2112 and/or GEOS2114 (Feb semester); GEOS2124 and/or GEOS2121 (July semster). Regardless, subject to the prerequisites for each individual unit of study, students may vary their enrolment across these streams. The School of Geosciences encourages students to construct a sequential ordering of units that best meets their interests and aspirations.

GEOG2321 Fluvial and Groundwater Geomorphology

Credit points: 6 Teacher/Coordinator: Dr Melissa Neave Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: GEOG(2311 or 2001) or 36 credit points of Junior study including GEOS1001 or GEOS1901 or GEOG1001 or ENVI (1001 or 1002) or GEOL (1001 or 1002 or 1501). Students in the Bachelor of Resource Economics should have 36 credit points of study in Biology (or Land and Water Science), Chemistry and Mathematics. Students in the Bachelor of Land and Water Science should have ENVI1002, 12 credit points of Chemistry, 6 credit points of Biology, BIOM1002. Prohibitions: GEOG (2002 or 2302 or 2303) or MARS2002 or MARS2006 Assessment: One 2 hr exam, one quiz, one field report, practical exercises

This unit of study provides an introduction to the fundamentals of fluvial geomorphology (the study of surface water as an agent of landscape change) and groundwater hydrology. The fluvial geomorphology section of the unit will describe the movement of water in stream channels and investigate the landscape change associated with that movement. Topics to be covered will include open channel flow hydraulics, sediment transport processes and stream channel morphology. Practical work will focus on the collection and analysis of field data. The quantity and quality of the groundwater resources are closely linked to geology and fluvial geomorphology. The groundwater section of this unit is based around four common groundwater issues: contamination, extraction, dryland salinity and groundwater-surface water interaction. In the practical component, common groundwater computer models such as FLOWTUBE and MODFLOW will be used to further explore these problems.

Textbooks

Recommended Textbooks: Fetter, CW. Applied Hydrogeology. Prentice-Hall. 2001. & Knighton, D. Fluvial Forms and Processes. Hodder-Arnold. 1998

GEOS2111 Natural Hazards: a GIS Approach

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey and others Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: 24 credit points of junior units of study including one of GEOS1001 or GEOS1002 or GEOS1003 or GEOG1001 or GEOG1002 or ENVI1002 or GEOL1001 or GEOL1002 or GEOS1902 or GEOL1501 or GEOS1901 or GEOS1903 Prohibitions: GEOG2411, GEOS2911 Assessment: One 2 hour exam, one assignment, report.

The geosciences provide an essential framework for understanding the environmental response to short- and long-term geologic, oceanic and atmospheric processes. This unit of study introduces students to a variety of natural phenomena that affect society with impact levels ranging from nuisance to disastrous. The discussion of each hazard focuses on: (1) the process mechanics, (2) hazards and risk, and (3) methods for mitigation. Geographic Information Systems (GIS) are used by scientists, planners, policy-makers and the insurance industry alike to address many issues relating to natural hazards. This unit of study will introduce students to the major concepts relating to GIS and provide practical experience in the application of GIS techniques to hazard mapping, risk assessment and mitigation.

GEOS2112 Economic Geography of Global Development

Credit points: 6 Teacher/Coordinator: Dr Bill Pritchard, A/Prof Phil Hirsch Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: 24 credit points of Junior units of study, including GEOS1001 or GEOS1002 or GEOS1003 or GEOS1901 or GEOS1902 or GEOS1903 or ECOP1001 or ECOP1002 or GEOG1002 or GEOG1001 or GEOL1002 or GEOL1902 Prohibitions: GEOS2912, GEOG2511 Assessment: One 2 hour exam, 2000 word essay, tutorial papers, practical report

In this unit of study, students will be introduced to the sub-discipline of economic geography by way of debates on the spatial character of global development. We focus on questions relating to who are the winners and losers from contemporary patterns of global economic change. This includes the analysis of relevant conceptual approaches to these questions (including comparative advantage, global commodity chain theory, regionalism, economic governance etc), plus 'hands-on' examination of the key institutions (such as the WTO and ADB) driving these changes. In general, issues are tailored to themes being played out in Asia-Pacific countries. Students are expected to participate in a variety of practical class exercises throughout the semester, which will include presenting the fruits of independent research activities. This unit provides an especially relevant feeder-unit into GEOS3053/ GEOS3054, the Asia-Pacific Field School.

GEOS2113 Making the Australian Landscape

Credit points: 6 Teacher/Coordinator: Dr S.J. Gale Session: Semester 1 Classes: Two - three 1 hour lectures and one - two 1 hour practicals per week. Prerequisites: 24 credit points of Junior units of study, including GEOS1002 or GEOS1003 or GEOS1902 or GEOS1903 or GEOG1001 or ENVI1002 or GEOL1001 or GEOL1002 or GEOL1902 Prohibitions: GEOS2913 Assessment: One 2 hour examination, practical reports.

The shifts in the nature of the Earth's environment over time and the resultant changes in process regimes have had dramatic impacts on the way the Australian physical landscape has evolved. We consider here the effects of these changes on the broad pattern of the landscape, focusing particularly on slopes and soils. We follow this by investigating the environmental changes that have taken place since the end of the last glacial, the time when the continent's climates and environments first took on a recognisably modern form. We deal specifically with the impact of human activity on the Australian biophysical environment, emphasising both pre-European impacts and those changes that have taken place since European contact.

GEOS2114 Volcanoes, Hot Rocks and Minerals

Credit points: 6 Teacher/Coordinator: Dr Derek Wyman, Dr Patrice Rey, Prof Geoff Clarke Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: One of (GEOG1001, GEOL1001, GEOL1002, GEOS1003, GEOS1903, ENVI1002, GEOL1902, GEOL1501) and 24 credit points of Junior Science units of study. Prohibitions: GEOL2111, GEOL2911, GEOS2914 Assessment: One 2 hour exam, practical reports, field trip report, group presentation

This unit of study relates the plate tectonics of subduction zones to a) volcanoes and their hazards; b) geological processes in the deep crust; and c) the formation of precious metal and gemstone ores around the Pacific Rim. A problem solving approach is used to develop the skills required to understand the history of individual volcanoes and predict their future activity and hazards. The unit includes a two to three day field trip to study an extinct volcanoe in NSW. Practical work includes independent study of igneous systems, rocks and minerals employing both microscope-based techniques and computer modeling. The unit provides relevant knowledge for GEOS3006/3906 - Mineral Deposits and Spatial Data Analysis.

GEOS2115 Oceans, Coasts and Climate Change

Credit points: 6 Teacher/Coordinator: Ass/Prof Dietmur Müller, Dr Peter Cowell Session: Semester 1 Classes: 26 x 1 hour lectures 6 x 1 hour workshops 1 x 8 hour field work 1 x 24 hour field school (3 days, Easter break) Prerequisites: 48 credit points from Junior Units of Study Prohibitions: GEOS2915, MARS2006 Assumed knowledge: At least one of (GEOG1001, GEOL1001, GEOL1002, GEOS1003, GEOS1903, ENVI1002, GEOL1902, GEOL1501) Assessment: 3 x web-based on-line reports (30% of total marks) 1 seminar presentation: field school (20% of total marks) 1 x 2 hour exam (50% of total marks)

This Unit of Study introduces core concepts about how the formation of ocean basins and their influence on climate govern the development of coasts and continental margins. These concepts provide a framework for understanding the geographic variation of coasts, continental shelves and sediment accumulations in the deep ocean. Ocean-basin evolution is explained in terms of movements within the Earth's interior and how these movements determine the geometry of ocean basins, and their alpine counterparts, which interact with the global circulation of the ocean and atmosphere. Affects of this interaction on energy regimes and hydrology are described in accounting for regional controls that govern supply and dispersal of sediments on continental margins and in ocean basins. These controls include effects on wave climates, wind-driven currents and tidal regimes. These controls also govern environmental conditions determining development of coral reefs and other ecosystems that play a key role in marine sedimentation. The Unit of Study systematically outlines how these factors have played out with climate change to produce the beaches, dunes, estuaries and deltas we see today, as well as the less familiar deposits hidden beneath the sea. The Unit also outlines how knowledge of responses to climate change in the past allow us to predict responses of coasts to accelerated climate change occurring now and in the future due to the industrial greenhouse effect. Overall therefore, the Unit aims to provide familiarity with fundamental phenomena central to the study of marine geoscience, introduced through process-oriented explanations. The Unit of Study is structure around problem-based project work, for which lectures provide the theoretical background.

Textbooks

Thurman, HV and Trujillo, AP. Introductory Oceanography. Pearson, Prentice-Hall, 10th Edition. 2004.

GEOS2121 Environmental and Resource Management

Credit points: 6 Teacher/Coordinator: Dr Phil McManus Session: Semester 2 Classes: Two 1 hour lectures and one 1 hour tutorial per week, one fieldtrip. Prerequisites: 24 credit points of junior units of study, including one of: GEOS1001 or GEOS1002 or GEOS1003 or GEOS1901 or GEOS1902 or GEOS1903 or ECOP1001 or ECOP1002 or GEOL1002 or GEOL1902 or GEOL1501 Prohibitions: GEOG2421, GEOL2202, GEOS2921 Assessment: One 2 hour exam, one 2000 word essay, tutorial papers, one fieldtrip report

This unit of study explores cultural constructions of nature and resources, the evolution of environmental thought and the debates about sustainable development. It integrates environmental, economic, cultural and social considerations, with particular regard to water, mining, forestry and fishing industries in Australia and other countries. The unit includes a fieldtrip to the Hunter Valley to look at geological and geographical issues pertaining to mines, wines and the thoroughbred breeding industries in this region. The unit of study enables students to learn about the economics of resource extraction and the social, cultural and environmental considerations that must be taken into account when developing and implementing environmental and resource management policies.

GEOS2122 Urban Geography

Credit points: 6 Teacher/Coordinator: Prof John Connell, Dr Kurt Iveson Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: 24 credit points of Junior units of study, including GEOS1001 or GEOS1002 or GEOS1003 or ECOP1001 or ECOP1002. Prohibitions: GEOS2922, GEOG2521 Assessment: One 2 hour exam, 2000 word essay, tutorial papers, practical reports

Cities are full of different people doing all sorts of different things. Developing an understanding of these processes necessitates attention to the goegraphical principles that underlie varied social practices (work, leisure, sport, music etc) and social categories such as ethnicity, gender, sexuality and race. We will investigate how different people perceive space and construct space, primarily in Western contexts and thereby seek to understand the cultural and political dimensions of everyday life in cities.

GEOS2124 Fossils and Tectonics

Credit points: 6 Teacher/Coordinator: A/Prof Dietmar Müller Session: Semester 2 Classes: Two 1 hour lectures plus one 3 hour practical each week. Prerequisites: 24 credit points of Junior units of study, including GEOS1003 or GEOS1903 or GEOL1002 or GEOL1902 or GEOL1501 Prohibitions: GEOS2924, GEOL2123, GEOL2124 Assessment: One 2 hour exam, practical reports, field report

The unit aims to convey how fossils, stratigraphic and structural data are used together to determine ages and environments and the deformation history of rock layers. It covers an introduction to historical geology and the evolution of the major fossils groups. Methods of stratigraphic age determination include litho-, bio-, chemo-, magneto- stratigraphy, as well as radiometric geochronology and the stratigraphic characteristics of the main geological time intervals. Structural methods are focused on brittle deformation in the upper crust and sediments. Students will gain familiarity with the most important fossil groups and how to identify them, and with the most important types of faults and folds. The formation of fossil fuels such as coal, oil and gas will also be covered in an earth history and resource exploration context. The simultaneous use of fossils, stratigraphy and structure to unravel the geological history of a set of exposed rock layers is demonstrated during a field excursion to Yass.

Textbooks

Classnotes available in co-op bookshop

GEOS2911 Natural Hazards: a GIS Approach Advanced

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey and others. Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: 24 credit points of junior units of study including a distinction in one of GEOS1001 or GEOS1002 or GEOS1003 or GEOS1901 or GEOS1902 or GEOS1903 or GEOG1001 or GEOG1002 or ENVI1002 or GEOL1001 or GEOL1002 or GEOL1902 or GEOL1501 Prohibitions: GEOG2411, GEOS2111 Assessment: One 2 hour exam, one assignment, practical report.

GEOS2912 Economic Geography of Global Dev. Adv.

Credit points: 6 Teacher/Coordinator: Dr Bill Pritchard, A/Prof Phil Hirsch Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: 24 credit points of Junior units of study, including a distinction in one of: GEOS1001 or GEOS1901 or GEOS1002 or GEOS1902 or GEOS1003 or GEOS1903 or ECOP1001 or ECOP1002 or GEOG1001 or GEOG1002 or GEOL1002 or GEOL1902 or GEOL1501 Prohibitions: GEOS2112, GEOG2511 Assessment: One 2 hour exam, 2000 word essay, tutorial papers, practical reports.

This is an Advanced version of GEOS2112. In this unit of study, students will be introduced to the sub-discipline of economic geography by way of debates on the spatial character of global development. We focus on questions relating to who are the winners and losers from contemporary patterns of global economic change. This includes the analysis of relevant conceptual approaches to these questions (including comparative advantage, global commodity chain theory, regionalism, economic governance etc), plus 'hands-on' examination of the key institutions (such as the WTO and ADB) driving these changes. In general, issues are tailored to themes being played out in Asia-Pacific countries. Students are expected to participate in a variety of practical class exercises throughout the semester, which will include presenting the fruits of independent research activities. This unit provides an especially relevant feeder-unit into GEOS3053/ GEOS3054, the Asia-Pacific Field School.

GEOS2914 Volcanoes, Hot Rocks and Minerals Adv

Credit points: 6 Teacher/Coordinator: Dr Derek Wyman Dr Patrice Rey Dr Geoff Clarke Session: Semester 1 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: 24 credit points of Junior Science units of study and Distinction in one of GEOL1002 or GEOS1002 or ENVI1002 or GEOL1501 or GEOL1902 or GEOS1003 or GEOS1903.This requirement may be varied and students should consult the unit of study coordinator. Prohibitions: GEOL2001, GEOS2114 Assessment: One 2 hour exam, practical reports, field trip report, group presentation.

This unit has the same objectives as GEOS2114 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. This unit may be taken as part of the BSc (Advanced).

Textbooks

No required textbook. Course notes available.

GEOS2921 Environmental & Resource Management Adv

Credit points: 6 Teacher/Coordinator: Dr Phil McManus Session: Semester 2 Classes: Two 1 hour lectures, one 1 hour tutorial per week and one fieldtrip. Prerequisites: 24 credit points of Junior units of study, including a distinction in one of: GEOS1001 or GEOS1901 or GEOS1002 or GEOS1902 or GEOS1003 or GEOS1903 or ECOP1001 or ECOP1002 or GEOG1001 or GEOG1002 or GEOL1002 or GEOL1902 or GEOL1501. This requirement may be varied and students should consult the unit of study coordinator. Prohibitions: GEOG2421, GEOL2202, GEOS2121 Assessment: One 2 hour exam, one 2000 word essay, one 2500 word essay, one fieldtrip report

Advanced students will complete the same core lecture materials as for GEOS2121 but are required to complete an essay in place of the regular tutorial reports prepared in GEOS2121.

GEOS2922 Urban Geography (Advanced)

Credit points: 6 Teacher/Coordinator: Prof John Connell, Dr Kurt Iveson Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: 24 credit points of Junior units of study, including a distinction in one of: GEOS1001 or GEOS1901 or GEOS1002 or GEOS 1902 or GEOS1003 or GEOS1903 or ECOP1001 or ECOP1002 or GEOG1001 or GEOG1002 Prohibitions: GEOS2122 Assessment: One 2 hour exam, 2000 word essay, tutorial papers, practical reports

Cities are full of different people doing all sorts of different things. Developing an understanding of these processes necessitates attention to the geographical principles that underlie varied social practices (work, leisure, sport, music, etc) and social categories such as ethnicity, gender, sexuality and race. This unit will examine how these process create and re-create urban landscapes. We will investigate how different people perceive space and construct space, primarily in western contexts, and thereby seek to understand the cultural and political dimensions of everyday life in cities.

GEOS2924 Fossils and Tectonics (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Dietmar Müller, Dr Patrice Rey, Prof Peter Hatherly Session: Semester 2 Classes: Two 1 hour lectures plus one 3 hour practical each week. Prerequisites: Distinction in GEOS1003 or Distinction average in 12 credit points of Junior Geoscience units (Geoscience is the disciplines of Geography, Geology and Geophysics) Prohibitions: GEOS2124, GEOL2123, GEOL2124 Assessment: One 2 hour exam, practical reports, field report

This unit has the same objectives as GEOS2124 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. This unit may be taken as part of the BSc (Advanced).

Textbooks

Classnotes by available in co-op bookshop

Geosciences senior units of study

Geosciences Senior units of study provide specialist themes or topics relevant to ongoing studies or professions. Students may select from any of the units listed below.

Geography Major

The requirements for a Major in Geography are defined in Table 1. As with intermediate units, students would normally select sequential units of study from one of four overlapping streams - Physical Geography, Environmental Geography, Human Geography, and Geographic Computer Methods - although students may construct any ordering of these units that cater to their interests and aspirations, subject to satisfying any prerequisites.

Physical Geography stream

GEOS3009/3909 (Coastal Environments & Processes); GEOS3015/3915 (Environmental Geomorphology), GEOS3513/3913 (Regional Development and Environment), GEOS3018/3918 (Rivers: Science, Policy and Management)

Environmental Geography stream

GEOS3017/3917 (Global Energy-Exploration & Exploitation), GEOS3014/3914 (GIS in Coastal Management), GEOS3018/3918 (Rivers: Science, Policy and Management) GEOS3511/3911 (Understanding Australia's Regions)

Human Geography stream

GEOS3053/3953 (Asia-Pacific field school-Assessment A), GEOS3054/3954 (Asia-Pacific field school-Assessment B), GEOS3513/3913 (Regional Development and Environment), GEOG3522/3922 (Cities and Citizenship), GEOS3521/3921 (Sustainable Cities)

Geographic Computer Methods stream

GEOS3014/3914 (GIS in Coastal Management), GEOS3007/3917 (Remote Sensing: Imaging the Earth), GEOS3016/3916 (Seafloor Processes & Imaging).

Geology and Geophysics Major

The requirements for a major in Geology and Geophysics are defined in Table 1. Students are required to take two compulsory units (GEOS3101/3801 and the field studies unit GEOS3008/3908, as well as two of GEOS3102, GEOS3103, GEOS3104. These units provide students with a foundation training that prepares them for further study in an Honours or postgraduate coursework program as well as enabling them to enter the main professional fields of the discipline, eg. Resource and Energy Exploration, Engineering Geology, and Environmental Geology.

GEOS3008 Field Geology and Geophysics

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey, Prof Peter Hatherley Session: Semester 2 Classes: (weeks 1-7) 14 days of field work Prerequisites: 12 credit points of Intermediate GEOS units Prohibitions: GEOL3103, GEOS3908 Assessment: The field work will be assessed by written reports (up to 30 pages in total) and field exercises

This unit is considered an essential component all Geology and Geophysics majors. All students will undertake a range of exercises, but concentrate on aspects that emphasise their chosen major: (1) field mapping and the analysis of geological objects in the field, in weakly to complexly deformed sedimentary and volcanic sequences; (2) field investigations of mineral deposits and their relationships to host rocks; and (3) the practical application of magnetic and electrical methods commonly employed in the search for mineral deposits. The field course complements other subject areas in Geology & Geophysics and will give students experience in the field identification of rocks and minerals, regional geology, stratigraphy, structure and rock relationships. Students will be required to pay the cost of hostel-style accommodation during field work, which may involve camping.

GEOS3009 Coastal Environments & Processes

Credit points: 6 Teacher/Coordinator: Assoc Prof. Gavin Birch, Dr Ana Vila-Concejo Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour practical per week; weekend excursion. Prerequisites: (6 credit points of Intermediate Geoscience* units) and (6 further credit points of Intermediate Geoscience or 6 credit points of Physics or Mathematics or Information Technology or Engineering units) or ((MARS2005 or MARS2905) and (MARS2006 or MARS2906)) Prohibitions: GEOS3909, MARS3003, MARS3105 Assessment: One 2 hour exam, two 1500 word reports.

Note: * Geoscience is the disciplines of Geography, Geology and Geophysics.

Australian coastal environments are dynamic systems responding to input sediments and processes as well as solid boundary conditions.
The unit focuses on high-energy wave and wind dominated coastal systems that include the beach-surf zone, dunes, barriers, carbonate (coral reef) environments and their Holocene/Quaternary evolution. The regional impact of waves, tides, embayments, and other environmental parameters in controlling morphology and deposits are addressed. The practical program uses real data sets collected during recent research programs and during two field excursions which address issues
specifically relevant to Australia's coastline. The excursions include one 2 day weekend field trip and one 5 day field trip to the Great Barrier Reef in the mid semester break. Note: Students will incur costs in attending the excursions. Alternative
work will be provided if students cannot attend the 5 day field trip.

Textbooks

Recommended:

GEOS3014 GIS in Coastal Management

Credit points: 6 Teacher/Coordinator: Dr Eleanor Bruce, Dr Peter Cowell. Session: Semester 2 Classes: Two 1 hour lectures and one 3 hour practical per week. Prerequisites: MARS(2005 or 2905) and MARS(2006 or 2906), or 12 credit points of Intermediate Geoscience* units, or (GEOS(2115 or 2915) and BIOL(2018 or 2918)) Prohibitions: GEOS3914, MARS3104. Assessment: One 2 hour exam, two project reports, quizzes.

Note: * Geoscience is the disciplines of Geography, Geology and Geophysics.

Coastal Management is about how scientific knowledge is used to support policy formulation and planning decisions in coastal environments. The course links coastal science to policy and practice in management of estuaries, beaches and the coastal ocean. The principles are exemplified through specific issues, such as coastal erosion, pollution, and impacts of climate-change. The issues are dealt with in terms of how things work in nature, and how the issues are handled through administrative mechanisms. These mechanisms involve planning strategies like Marine Protected Areas and setback limits on civil development in the coastal zone. At a practical level, the link between science and coastal management is given substance through development and use of 'decision-support models'. These models involve geocomputing methods that entail application of simulation models, remotely sensed information, and Geographic Information Systems (GIS). The course therefore includes both principles and experience in use of these methods to address coastal-management issues. (It thus also involves extensive use of computers.) Although the focus is on the coast, the principles and methods have broader relevance to environmental management in particular, and to problem-solving in general. That is, the course has vocational relevance in showing how science can be exploited to the benefit of society and nature conservation.

Textbooks

Burrough, PA and McDonnell, RA. Principles of Geographical Information Systems: Spatial information systems and geostatistics. Oxford University Press. Oxford. 1998.

GEOS3015 Environmental Geomorphology

Credit points: 6 Teacher/Coordinator: Dr Stephen Gale Session: Semester 2 Classes: Two 1 hour lectures, one 1 hour tutorial and one 2 hour practical per week or equivalent. Prerequisites: 24 credit points of Intermediate units, including 6 credit points of Intermediate Geography. Prohibitions: GEOS3915 Assumed knowledge: Intermediate geomorphology/ physical geography/ geology. Assessment: One 2 hour exam, practical & field reports

The first part of this unit deals with the effects of weathering on the physical and the built environment, and considers the relationship between soil and landforms. The second part investigates the environmental changes that have taken place since the end of the last glacial, the time when the world's climates and environments first took on a recognisably modern form. It deals specifically with changes to the Australian biophysical environment and will focus on human-environmental impacts, both under pre-European and post-contact conditions.

GEOS3018 Rivers: Science, Policy and Management

Credit points: 6 Teacher/Coordinator: Dr Mel Neave. Session: Semester 1 Classes: Two 1 hour lectures, one 1 hour tutorial, two 4 hour practicals per week; fieldwork Prerequisites: (24 credit points of Intermediate units of study including 6 credit points of Intermediate Geography units of study) or ((MARS2005 or MARS2905) and (MARS2006 or MARS2906)) Prohibitions: GEOS3918 Assessment: One 2 hour exam, two 1500 word essays

The unit of study is concerned with understanding the functioning of river catchments from both natural science and social science perspectives, at a variety of scales. The catchment as a morphodynamic process-response system is addressed with an emphasis on the relationships between processes and landform entities. Similarly, relationships within social, economic, and political systems are explored within the catchment context, with particular emphasis on the interactions between the social system and bio-physical system. Empirical context for the unit will primarily be drawn from the Murray-Darling, Mekong, and Hawkesbury-Nepean catchments. Fieldwork in the latter is integral to the unit of study.

Textbooks

Gordon, et al. Stream Hydrology: An Introduction for Ecologists. 2004.

GEOS3513 Regional Development and Environment

GEOS3913 Regional Development & Environment (Adv)

This unit of study is a more advanced version of GEOS3513. It includes more challenging assessment tasks.

GEOG3521 Sustainable Cities

Credit points: 6 Teacher/Coordinator: Dr Phil McManus Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical/tutorial per week. Prerequisites: 24 credit points of Intermediate Units of study including 6 credit points of Intermediate Geography units of study. Prohibitions: GEOG3921, GEOG3202 Assessment: One 2 hour exam; 2000 word essay, tutorial papers, practical reports

Are cities sustainable? Why or why not? This unit of study develops themes introduced in Intermediate units in Geography relating to sustainability, focusing on the ways we manage urban regions. This involves discussion of topics including utopian visions for cities, urban history, ecological footprint analysis, bioregionalism, transport options, urban form and urban policy, with reference to sustainable futures. The unit of study looks at different Australian cities and includes practical work on a current sustainability issue in Sydney.

GEOS3522 Cities and Citizenship

Credit points: 6 Teacher/Coordinator: Dr Kurt Iveson Session: Semester 2 Classes: One 2 hour lecture, one 1 hour tutorial and one 2 hour practical per week. Prerequisites: 6 credit points of intermediate geography. Prohibitions: GEOG3203, GEOS3922 Assessment: One 2 hour exam, one 2000 word essay, one 3000 word practical report, tutorial participation

What does it mean to be a 'citizen', and what has this got to do with cities? This unit explores the urban dimension of contests over the meaning of citizenship. The first half will consider historical configurations of urban citizenship, from the Greek city-states of antiquity through to imperial, colonial and industrial cities. The second half will then focus on contemporary globalising cities. A series of case studies will consider the production of new configurations of urban citizenship across a range of cities in the world, looking at issues such as: asylum-seekers and the city; children and the city; homelessness in the city; 'culture jamming' and new forms of urban protest; trans-national social movements. The module will involve a substantial practical component, encouraging students to draw on their own experiences of city life to reflect on the meanings of citizenship.

GEOS3101 Earth's Structure and Evolution

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey, Prof Geoff Clarke Session: Semester 1 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: GEOS(2114 or 2914) and GEOS(2124 or 2924); or 24 credit points of Intermediate Science units of study and GEOS1003 with permission of the Head of School Prohibitions: GEOS(3801 and 3003 and 3903 and 3004 and 3904 and 3006 and 3906 and 3017 and 3917) Assumed knowledge: GEOS2114, GEOS2124 Assessment: one 2 hour exam, practical and field reports

The Earth's crust and upper mantle, or lithosphere, are a consequence of dynamic and thermalprocesses operating since the beginning of the Archaean. This unit focuses on information and techniques that enable anunderstanding of these processes. The main topics presented in this unit include: the formation and evolution of oceanic and continental lithosphere; structural deformation, magmatism and metamorphism at plate boundries; and the mesoscopic and microscopic analysis of igneous and metamorphic rocks. Practical classes are designed to enable students to competently and independently identify the common crystalline rocks in hand-specimen; and to gather and interpret the structural field data which enables the determination of the structural style and deformational history presented in particular tectonic settings. The concepts and content presented in this unit are generally considered to be essential knowledge for geologists and geophysicists and provide a conceptual framework for their professional practice. Students wishing to specialise in the field and become professional geologists will normally need to expand upon the knowledge gained from this unit and either complete an honours project or progress to postgraduate coursework in this field.

GEOS3102 Global Energy and Resources

Credit points: 6 Teacher/Coordinator: Dr Derek Wyman and A/Prof Gavin Birch Session: Semester 1 Classes: two 1 hour lectures and one 2 hour tutorial/practicals per week. Prerequisites: GEOS(2114 or 2914) and GEOS(2124 or 2924); or 24 credit points of Intermediate Science units of study and GEOS1003 with permission of the Head of School Prohibitions: GEOS3802, 3003, 3903, 3004, 3904, 3006,3906, 3017 and 3917 Assumed knowledge: GEOS 2114 and GEOS2124 Assessment: one 2 hour exam, practical and field reports

This unit examines the processes that form energy and mineral resources, outlines the characteristics of major fossil fuel and metal ore deposits and introduces the principles that underpin exploration strategies used to discover and develop geological resources. The unit will focus on a variety of topics including: coal; petroleum formation and migration, hydrocarbon traps and maturation; precious metal, base metal and gemstone deposit types; and exploration strategies. An integrated approach will relate tectonic processes through time to the formation of fossil fuel and mineral provinces. Practical exercises will introduce students to the techniques used to identify economically viable geological resources using a variety of exercises based on actual examples of resource exploration drawn from both the petroleum and minerals industry. An excursion to active and historic mining sites in NSW will complement the practical studies.

GEOS3103 Environmental & Sedimentary Geology

Credit points: 6 Teacher/Coordinator: Dr Tom Hubble and Dr Adriana Dutkiewicz Session: Semester 2 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: GEOS(2124 or 2924) and GEOS(2111 or 2911 or 2114 or 2914 or 2113 or 2913); or GEOS(1003 or 1903) and 24 credit points of intermediate Science units of study with permission of the Head of School Prohibitions: GEOS3803 Assumed knowledge: GEOS1003, GEOS2124 Assessment: one 2 hour exam, practical and field reports

Sediments and sedimentary rocks cover most of the Earth's surface, record much of the Earth's geological history and host important resources such as petroleum, coal, water and mineral ores. The aim of this unit is to provide students with the skills required to examine, describe and interpret sediments and sedimentary rocks for a variety of different purposes. Specific focuses of the unit will be on identifying the recent or ancient environment in which sedimentary materials were deposited; the techniques used to identify anthropogenic pollution of modern sediments; and an assessment of natural hazards commonly associated with the formation of sediment bodies such as landslides and deep marine slides. On completion of this unit students will be familiar with the natural processes that form, modify, pollute and lithify sediments and the recognition and management of the environmental hazards associated with sediment bodies. A variety of of sedimentary settings will be examined including fluvial, alluvial, lacustrine, marginal marine and deep marine environments. The various controls on the sedimentary record such as climate and sea-level change, as well as diagenesis and geochemical cycles will also be discussed. Practical exercises will require students to examine global datasets, determine the properties of sedimentary rocks, as well as collect and interpret their own field data. The course is relevant to students interested in petroleum or mineral exploration, environmental and engineering geology as well as marine geoscience.

Textbooks

Course notes will be available from the Copy Centre and an appropriate set of reference texts will be placed on special reserve in the library.

GEOS3104 Geophysical Methods

Credit points: 6 Teacher/Coordinator: Prof Peter Hatherly and A/Prof Dietmar Mueller Session: Semester 2 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: 24 credit points of intermediate Science units of study or (GEOS(2114, 2914) and GEOS(2124, 2924)) Prohibitions: GEOS3804, GEOS3003, GEOS 3903, GEOS3006, GEOS3906, GEOS3016, GEOS3916, GEOS3017, GEOS3917 Assumed knowledge: GEOS2114 and GEOS2124 Assessment: one 2 hour exam, practical and field reports

This unit introduces the common geophysical methods used to investigate the interior of the Earth and focuses on the techniques used for mineral and hydrocarbon exploration and production. Applications of these methods to problems in global geophysics will also be examined with an emphasis on on their use in marine and terrestrial environments. On completion of this unit students will have developed a thorough understanding of the commonly used geophysical methods and will be able to evaluate and critically assess most forms of geophysical data as well as be able to actively participate in geophysical explorations. The unit is aimed at students with interests in land-based and marine resource exploration, plate tectonics, internal earth structure, and near-surface investigations of groundwater resources and environmental pollution. Students wishing to specialise in the field and become professional geophysicists will normally need to expand upon the geophysics knowledge gained from this unit and either complete an honours project or progress to postgraduate coursework in this field.

Textbooks

Class notes will be supplied through the University copy Centre. Geophysical textbooks held in the library provide adequate additional information that supports the class notes.

GEOS3053 Asia-Pacific Field School-Assessment A

Credit points: 6 Teacher/Coordinator: Prof Phil Hirsch. Session: S1 Intensive Classes: Six weeks intensive. eight modules of 3 lectures each; ten full days' equivalent fieldwork; 20 hours small group work. Prerequisites: 6 credit points of Intermediate units of study in Geography. Department permission is required for enrolment. Corequisites: GEOS3054 Prohibitions: GEOG3201, GEOS3953 Assessment: One tutorial paper, one extended field report, one exam

Note: Department permission required for enrolment

Note: Students must contact the unit coordinator no later than the end of May in the year before taking this Unit.

The unit of study can be taken only in coincidence with GEOS 3054 and with prior permission from the unit of study coordinator. It constitutes a Field School run over a six- week period in January-February, prior to the commencement of the semester. In 2010 the Field School will be held in China, Thailand, Laos, Cambodia and Viet Nam. In other years it may be held in the South Pacific (Vanuatu and Fiji). GEOS3053 will focus on the use, development and management of the Mekong River at various scales from village to international river basin. The Field School is run in close association with local universities, whose staff and students participate in some components of the course. Places are limited, and students interested in the 2010 Field School should indicate expression of interest to philip.hirsch@usyd.edu.au before the end of May 2009.

GEOS3054 Asia-Pacific Field School-Assessment B

Credit points: 6 Teacher/Coordinator: Prof Phil Hirsch. Session: S1 Intensive Classes: Six weeks intensive. eight modules of 3 lectures each; ten full days' equivalent fieldwork; 20 hours small group work Prerequisites: 6 credit points of Intermediate units of study in Geography. Department permission required for enrolment. Corequisites: GEOS3053 Prohibitions: GEOG3201, GEOS3954 Assessment: One tutorial paper, one extended field report, one exam

Note: Department permission required for enrolment

Note: Students must contact the unit coordinator no later than the end of May in the year before taking this Unit.

The unit of study can be taken only in coincidence with GEOS3053 and with prior permission from the unit of study coordinator. It constitutes a Field School run over a six- week period in January-February, prior to the commencement of the semester. In 2010 the Field School will be held in China, Thailand, Laos, Cambodia and Viet Nam. In other years it may be held in the South Pacific (Vanuatu and Fiji). GEOS3054 will focus on economic development and regional intergration in the Greater Mekong Subregion and their social & environmental implications at various scales from village to transnational region. It is run in close association with local universities, whose staff and students participate in some components of the course. Places are limited, and students interested in the 2010 Field School should indicate expression of interest to philip.hirsch@usyd.edu.au before the end of May 2009.

GEOS3801 Earth's Structure and Evolutions (Adv)

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey, Prof Geoff Clarke Session: Semester 1 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: Distinctions in GEOS(2114 or 2914) and GEOS(2124 or 2924); Students who have a credit average for all Geoscience units may enrol in this unit with the permission of the Head of School Prohibitions: GEOS3101, GEOS3003, GEOS3903, GEOS3004, GEOS3904, GEOS3006, GEOS3906, GEOS3017 and GEOS3917 Assumed knowledge: GEOS2114, GEOS2124 Assessment: one 2 hour exam, practical and field reports

This unit has the same objectives as GEOS3101 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. Specific details for this unit of study will be announced in meetings with students in week 1 of semester.

GEOS3802 Global Energy and Resources (Adv)

Credit points: 6 Teacher/Coordinator: Dr Derek Wyman and A/Prof Gavin Birch Session: Semester 1 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week Prerequisites: Distinction in GEOS(2114 or 2914) and GEOS(2124 or 2924); Students who have a credit average for all Geoscience units may enrol in this unit with the permission of the Head of School. Prohibitions: GEOS3102, GEOS3003, GEOS3903, GEOS3004, GEOS3904, GEOS3006, GEOS3906, GEOS3017, and GEOS3917 Assumed knowledge: GEOS2114 and GEOS2124 Assessment: one 2 hour exam, practical and field reports

This unit has the same objectives as GEOS3102 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. Specific details for this unit of study will be announced in meetings with students in week 1 of semester.

GEOS3803 Environmental & Sedimentary Geology(Adv)

Credit points: 6 Teacher/Coordinator: Dr Tom Hubble and Dr Adriana Dutkiewicz Session: Semester 2 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: Distinctions in GEOS(2114 or 2914) and GEOS(2124 or 2924); Students who have a credit average for all Geoscience units may enrol in this unit with permission of the Head of School Prohibitions: GEOS3103 Assumed knowledge: GEOS1003, GEOS2124 Assessment: one 2 hour exam, practical and field reports

This unit has the same objectives as GEOS3103 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independant work to meet unit objectives. Specific details for this unit of study will be announced in meetings with students in week 1 of semester.

Textbooks

Course notes will be available from the copy centre and appropriate set of reference texts will be placed on special reserve in the library.

GEOS3804 Geophysical Methods (Advanced)

Credit points: 6 Teacher/Coordinator: Prof Peter Hatherly and A/Prof Dietmar Müller Session: Semester 2 Classes: two 1 hour lectures and one 3 hour tutorial/practical class per week. Prerequisites: Distinction in GEOS2114 or GEOS2914 and GEOS2124 or GEOS2924; Students who have a credit average for all Geoscience units may enrol in this unit with the permission of the Head of School Prohibitions: GEOS3104, GEOS3003, GEOS3903, GEOS3006, GEOS3906, GEOS3016, GEOS3916, GEOS3017, GEOS3917 Assessment: one 2 hour exam, practical and field reports

This unit has the same objectives as GEOS3104 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independant work to meet unit objectives. Specific details for this unit of study will be announced in meetings with students in week 1 of semester.

Textbooks

Class notes will be supplied through the University Copy Centre. Geophysical textbooks held in the library provide adequate additional information that supports the class notes.

GEOS3908 Field Geology and Geophysics (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Patrice Rey Prof Peter Hatherly Session: Semester 2 Classes: 14 days of fieldwork. Prerequisites: Distinction average in 12 credit points of Intermediate GEOS units. Department permission required for enrolment. Prohibitions: GEOS3008 Assessment: Written reports and field exercises

Note: Department permission required for enrolment

Note: A Distinction average in prior Geology units of study is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator.

This unit has the same objectives as GEOS3008 and is suitable for students who wish to pursue aspects of the subject in greater depth. Entry is restricted and selection is made from the applicants on the basis of their performance to date. Students that elect to take this unit will participate in alternatives to some aspects of the standard unit and will be required to pursue independent work to meet unit objectives. Specific details for this unit of study will be announced in meetings with students in week prior to the field camp which is usually in the break between semester 1 and 2. This unit of study may be taken as part of the BSc (Advanced).

GEOS3909 Coastal Environments and Processes (Adv)

Credit points: 6 Teacher/Coordinator: A/Prof Gavin Birch Dr Ana Vila Concejo Session: Semester 1 Classes: Three 1 hour lectures, two 3 hour practicals per week, fieldwork. Prerequisites: Distinction average in ((6 credit points of Intermediate Geoscience* units) and (6 further credit points of Intermediate Geoscience or 6 credit points of Physics, Mathematics, Information Technology or Engineering units) or ((MARS2005 or MARS2905) and (MARS2006 or MARS2906))) Prohibitions: GEOS3009, MARS3003, MARS3105 Assessment: One 2 hour exam, two 1500 word reports.

Note: A distinction average in prior Geography or Geology units is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator.

Advanced students will complete the same core lecture material as for GEOS3009 but will carry out more challenging projects, practicals, assignments and tutorials.

GEOS3914 GIS in Coastal Management (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Peter Cowell & Dr Eleanor Bruce. Session: Semester 2 Classes: Two hours of lectures, one 3 hour practical per week comprising one 1 hour practical demonstration and one 2 hour practical. Prerequisites: Distinction average in 12 credit points of intermediate geography or geology units or GEOS (2115 or 2915) and BIOL (2018 or 2918) Department permission required for enrolment. Prohibitions: GEOS3014, MARS3104 Assessment: One 2 hour exam, project work, two practical-based project reports, fortnightly progress quizzes.

Note: Department permission required for enrolment

Note: A distinction average in prior Geography, Geology or Marine Science units of study is normally required for admission. This requirement may be varied and students should consult the unit of study coordinator.

Advanced students will complete the same core lecture material as for GEOS3014 but will carry out more challenging projects, practicals, assignments and tutorials.

GEOS3915 Environmental Geomorphology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Stephen Gale. Session: Semester 2 Classes: 3 hours lectures, 6 hours practical per week, fieldwork. Prerequisites: Distinction average in 24 credit points of Intermediate units of study including 6 credit points of Intermediate Geography units of study. Prohibitions: GEOS3015 Assessment: One 2 hour exam, two 1500 word essays, prac and field reports.

Note: Department permission required for enrolment

Advanced students will complete the same core lecture material as for GEOS3015, but will carry out more challenging projects, practicals, and field reports.

GEOS3918 Rivers: Science and Management (Adv)

Credit points: 6 Teacher/Coordinator: Dr Melissa Neave Session: Semester 1 Classes: Two 1 hour lecture, one 1 hour tutorial, two 4 hour practicals per week, fieldwork. Prerequisites: Distinction average in (24 credit points of Intermediate units of study including 6 credit points of Intermediate Geography units of study) or ((MARS2005 or MARS2905) and (MARS2006 or MARS2906)) Prohibitions: GEOS3018 Assessment: One 2 hour exam, two 1500 word essays.

Advanced students will complete the same core lecture material as for GEOS3018, but will carry out more challenging projects, practicals, assignments and tutorials.

GEOG3921 Sustainable Cities (Adv)

Credit points: 6 Teacher/Coordinator: Dr Phil McManus Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical/tutorial per week. Prerequisites: Distinction average 24 credit points of Intermediate Units of study including 6 credit points of Intermediate Geography units of study. Prohibitions: GEOG3521, GEOG3202 Assessment: One 2 hour exam; 2000 word essay, tutorial papers, practical reports.

Advanced students will complete the same core lecture material as for GEOG3521, but will carry out more challenging projects, practicals, assignments and tutorials.

GEOS3922 Cities and Citizenship (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Kurt Iveson Session: Semester 2 Classes: Two 1 hour lectures and one 2 hour practical per week. Prerequisites: Distinction average in 24 credit points of Intermediate Units of study including 6 credit points of Intermediate Geography units of study. Prohibitions: GEOS3522 Assessment: One 2 hour exam; e-Sim assignments, tutorial papers.

Advanced students will complete the same core lecture material as for GEOS3022, but will carry out more challenging projects, assignments and tutorials.

GEOS3953 Asia-Pacific Field School-A (Adv)

Credit points: 6 Teacher/Coordinator: Prof Phil Hirsch Session: S1 Intensive Classes: Six weeks intensive. eight modules of 3 lectures each; 10 full days' equivalent fieldwork; 20 hours small group work Prerequisites: Distinction average in 24 credit points of Intermediate units of study including 6 credit points of Intermediate Geography units of study. Department permission required for enrolment. Corequisites: GEOS3954 Prohibitions: GEOS3053 Assessment: One tutorial paper, one extended field report, one exam

Note: Department permission required for enrolment

Note: Students must contact the unit coordinator no later than the end of May in the year before taking this Unit.

The unit of study can be taken only in coincidence with GEOS 3954 and with prior permission from the unit of study coordinator. It constitutes a Field School run over a six- week period in January-February, prior to the commencement of the semester. In 2010 the Field School will be held in China, Thailand, Laos, Cambodia and Viet Nam. In other years it may be held in the South Pacific (Vanuatu and Fiji). GEOS3953 will focus on the use, development and management of the Mekong River at various scales from village to international river basin. The Field School is run in close association with local universities, whose staff and students participate in some components of the course. Places are limited, and students interested in the 2010 Field School should indicate expression of interest to philip.hirsch@usyd.edu.au before the end of May 2009. Advanced students will carryout more challenging fieldwork reports.

GEOS3954 Asia-Pacific Field School-B (Adv)

Credit points: 6 Teacher/Coordinator: Prof Phil Hirsch. Session: S1 Intensive Classes: six weeks intensive. eight modules of 3 lectures each; 10 full days' equivalent fieldwork; 20 hours small group work Prerequisites: Distinction average in 24 credit points of Intermediate units of study including 6 credit points of Intermediate Geography units of study. Department permission required for enrolment. Corequisites: GEOS3953 Prohibitions: GEOS3054 Assessment: One tutorial paper, one extended field report, one exam

Note: Department permission required for enrolment

Note: Students must contact the unit coordinator no later than the end of May in the year before taking this Unit.

The unit of study can be taken only in coincidence with GEOS 3953 and with prior permission from the unit of study coordinator. It constitutes a Field School run over a six- week period in January-February, prior to the commencement of the semester. In 2010 the Field School will be held in China, Thailand, Laos, Cambodia and Viet Nam. In other years it may be held in the South Pacific (Vanuatu and Fiji). GEOS3954 will focus on the use, development and management of the Mekong River at various scales from village to international river basin. The Field School is run in close association with local universities, whose staff and students participate in some components of the course. Places are limited, and students interested in the 2010 Field School should indicate expression of interest to philip.hirsch@usyd.edu.au before the end of May 2009. Advanced students will carryout more challenging fieldwork reports.

Geography or Geology and Geophysics Honours

Offered February and July. Information sessions about Geography or Geology and Geophysics Honours are held for interested third year students during Second Semester. Students contemplating Honours in their fourth year should consider possible thesis topics and discuss these with potential staff supervisors. Entry into fourth year Honours will require completion of units in Intermediate and Senior Geoscience units (to be passed at the level of credit or better) and a satisfactory WAM. In some years when the number of applicants exceeds resources (availability of supervisors, laboratory space etc.) offers will be made according to academic merit. Students will be notified in January of their formal acceptance into the Honours program. Honours students are required to undertake formal coursework during their first semester and to participate in seminars throughout the year as arranged. They will be required to study original problems, working as appropriate in the field, the laboratory, libraries, and in some instances in conjunction with other university or government departments. A dissertation of not more than 20 000 words must be submitted during the second semester, followed by an examination that may include both written and oral work. Further details relating to Geography Honours are available from Dr. Mel Neave (mneave@geosci.usyd.edu.au) Further details of Geology and Geophysics Honours are available from Dr. Michael Hughes (michaelh@mail.usyd.edu.au)

Geosciences Postgraduate Study

Details concerning fields of postgraduate study in Geology and Geophysics may be obtained from Dr Derek Wyman or the Head of School. Details concerning Geography may be obtained from A/Prof Deirdre Dragovich or the Head of School.

History and Philosophy of Science

History and Philosophy of Science allows students to enrich their knowledge of science and stand back from the specialised concerns of their other subjects by gaining a broader perspective on what science is, how it acquired its current form and how it fits into contemporary society. HPS is particularly relevant for students hoping to make careers in science policy, science administration, science education and science reporting. Any student with a genuine interest in science will derive benefit from study in HPS.

Course Advice

An advisor will be available in the Unit for History and Philosophy of Science during the enrolment period. The Unit is located on Level 4 of the Carslaw Building. More detailed information on courses is available either in a handbook from the Unit office or electronically via the Unit website http://www.usyd.edu.au/hps/. The Unit for History and Philosophy of Science offers the Junior unit of study Bioethics (HPSC1000), which analyses and discusses the ethical concerns raised by scientific accomplishments in modern society. Students interested in related topics should consider taking the unit Concepts and Issues in Physical Science (PHYS1600) offered in the School of Physics. This unit serves as useful background for further studies in HPS and is offered as an Arts unit for all students, including students enrolled in the Faculty of Science.

Junior units of study

HPSC1000 Bioethics

Credit points: 6 Teacher/Coordinator: Dr Catherine Mills Session: Semester 1 Classes: One 1 hour and one 2 hour lecture and one 1 hour tutorial per week. Prohibitions: HPSC1900 Assessment: Short essays, tutorial work, tests

Note: This Junior unit of study is highly recommended to Intermediate and Senior Life Sciences students.

Science has given us nearly infinite possibilities for controlling life. Scientists probe the origins of life through research with stem cells and embryos. To unlock the secrets of disease, biomedicine conducts cruel experiments on animals. GM crops are presented as the answer to hunger. Organ transplantation is almost routine. The international traffic in human body parts and tissues is thriving. The concept of brain death makes harvesting organs ethically more acceptable. It may also result in fundamental changes in our ideas about life. Science has provided new ways of controlling and manipulating life and death. As a consequence, difficult ethical questions are raised in increasingly complex cultural and social environments. This course will discuss major issues in the ethics of biology and medicine, from gene modification to Dolly the sheep. This unit will be introductory, but a small number of topical issues will be studied in depth. No scientific background beyond School Certificate level will be assumed.

Textbooks

Course reader

HPSC1900 Bioethics (Advanced)

Credit points: 6 Teacher/Coordinator: HPS Staff Session: Semester 1 Classes: Three 1 hour lectures, one 1 hour tutorial per week. Prohibitions: HPSC1000 Assessment: Tutorial work, essays, exam, tutorial participation.

Note: Department permission required for enrolment

The topics covered by HPSC1000 - Bioethics will be treated in more depth, in a special tutorial set aside for Advanced students.

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Intermediate units of study

There are two Intermediate units of study offered by the Unit for History and Philosophy of Science. They provide a broad background in the history and the philosophy of science, and a solid background for students in arts and science who wish to acquaint themselves with principles and methods in the history and philosophy of science. For students who wish to major in HPS, they provide essential background knowledge.

HPSC2100 The Birth of Modern Science

Credit points: 6 Teacher/Coordinator: Dr Ofer Gal Session: Semester 1 Classes: Three 1 hour lectures, one 1 hour tutorial per week. Prerequisites: 24 credit points of Junior units of study Prohibitions: HPSC2002, HPSC2900 Assessment: Short essays, tutorial work, tests.

Modern culture is a culture of science. Modern Western science is the outcome of a historical process of 2,500 years. In this course we investigate how Western knowledge-theoretical, technological and medical-acquired the characteristics of modern science: its specific social structure, contents, values and methods. We will look at some primary chapters of this process, from antiquity to the end of the seventeenth century, and try to understand their implications to understanding contemporary science in its culture. Special emphasis will be given to the scientific revolution of the seventeenth century, which is often described as the most important period in the history of science and as one of the most vital stages in human intellectual history.

Textbooks

Henry, J. The Scientific Revolution and the Origins of Modern Science.

HPSC2101 What Is This Thing Called Science?

Credit points: 6 Teacher/Coordinator: Dean Rickles Session: Semester 2,Summer Main Classes: Three 1 hour lectures and one 1 hour tutorial per week. Prerequisites: 24 credit points of Junior units of study Prohibitions: HPSC2001, HPSC2901 Assessment: Short essays, tutorial work, tests.

Philosophers of science aim to define what distinguishes creationism from evolutionary theory, or astrology from astronomy. They give reasons why we can believe that today's theories are improvements over those that preceded them and how we know that what we see and do in scientific practice reflects the nature of reality. This course critically examines the most important attempts to define the scientific method, to draw a line dividing science from non-science, and to justify the high status generally accorded to scientific knowledge. The philosophies of science studied include Karl Popper's idea that truly scientific theories are falsifiable, Thomas Kuhn's proposal that science consists of a series of paradigms separated by scientific revolutions; and Feyerabend's anarchist claim that there are no objective criteria by which science can be distinguished from pseudo-science. This unit of study also explores contemporary theories about the nature of science and explores ideas about the nature of the experimental method and concepts such as underdetermination, the nature of scientific explanation, theory confirmation, realism, the role of social values in science, sociological approaches to understanding science, and the nature of scientific change.

Textbooks

Alan F Chalmers. What Is This Thing Called Science? 3rd edition.

HPSC2900 The Birth of Modern Science (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Ofer Gal Session: Semester 1 Classes: Three 1 hour lectures and one 1 hour tutorial per week. Prerequisites: Enrolment in the Talented Student Program or 24 credit points of Junior study with a Distinction average Prohibitions: HPSC2002, HPSC2100 Assessment: Short essays, tutorial work, tests.

Note: Department permission required for enrolment

The topics covered in 'The Birth of Modern Science' will be covered in more depth, in a special tutorial set aside for advanced students.

Textbooks

Henry, J. The Scientific Revolution and the Origins of Modern Science.

HPSC2901 What Is This Thing Called Science? (Adv)

Credit points: 6 Teacher/Coordinator: Dean Rickles Session: Semester 2 Classes: Three 1 hour lectures and one 1 hour tutorial per week. Prerequisites: Enrolment in the Talented Student Program or 24 credit points of Junior study with a Distinction average Prohibitions: HPSC2002, HPSC2100 Assessment: Short essays, tutorial work, tests.

Note: Department permission required for enrolment

The topics covered in 'What is This Thing Called Science?' will be covered in more depth, in a special tutorial set aside for advanced students.

Textbooks

Alan F Chalmers. What Is This Thing Called Science? 3rd edition.

Senior units of study

Students wishing to major in History and Philosophy of Science in either the BSc, BA or BLibSt must take 24 credit points from the following Senior units of study. Our Intermediate courses provide students with a background in the history and philosophy of science. HPSC3022 Science and Society, provides students with an essential background in the sociology of science. This unit of study is compulsory for majors in history and philosophy of science.

HPSC3002 History of Biological/Medical Sciences

Credit points: 6 Teacher/Coordinator: Dr Hans Pols Session: Semester 2 Classes: Two 1 hour lectures and two 1 hour tutorials per week. Prerequisites: At least 12 credit points of Intermediate HPSC units or Credit or better in at least 6 credit points of Intermediate HPSC units, and at least 24 credit points of Intermediate or Senior units Assumed knowledge: HPSC (2001 and 2002) or HPSC (2100 and 2101) Assessment: Short essays, presentation, tutorial work, final essay.

Throughout the ages people have been born, have died, and in between have lived in various stages of sickness or health. In this unit of study we shall look at how these states of being were perceived in different times and places throughout history, while at the same time noting the increasing medicalisation of everyday life, together with the irony that the "miracles" of modern medicine appear to have created a generation of the "worried well". Using this historical perspective, we shall ask how perceptions of sickness, health and the related provision of health care have been intertwined with social, political and economic factors and, indeed still are today.

Textbooks

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HPSC3016 The Scientific Revolution

Credit points: 6 Teacher/Coordinator: Dr Ofer Gal Session: Semester 2 Classes: Two 1 hour lectures and two 1 hour tutorials per week. Individual student consultation as required. Prerequisites: At least 12 credit points of Intermediate HPSC units or Credit or better in at least 6 credit points of Intermediate HPSC units, and at least 24 credit points of Intermediate or Senior units. Prohibitions: HPSC3001, HPSC3106 Assumed knowledge: HPSC (2100 and 2101) or HPSC (2001 and 2002) Assessment: Take-home tests, short essays, tutorial participation.

Note: This unit will not be offered every year.

Modern Western science has a number of characteristics which distinguish it from other scientific cultures. It ascribes its tremendous success to sophisticated experiments and meticulous observation. It understands the universe in terms of tiny particles in motion and the forces between them. It is characterised by high- powered mathematical theorising and the rejection of any intention, value or purpose in Nature. Many of these characteristics were shaped in the 17th century, during the so called scientific revolution. We will consider them from an integrated historical- philosophical perspective, paying special attention to the intellectual motivations of the canonical figures of this revolution and the cultural context in which they operated. Topics will include: experimentation and instrumentation, clocks, mechanistic philosophy, and the changing role of mathematics.

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HPSC3021 Philosophy and Sociology of Biology

Credit points: 6 Teacher/Coordinator: Dr Dominic Murphy Session: Semester 1 Classes: Two 1 hour lectures and two 1 hour tutorials per week Prerequisites: At least 12 credit points of Intermediate HPSC units or Credit or better in at least 6 credit points of Intermediate HPSC units, and at least 24 credit points of Intermediate or Senior units. Prohibitions: HPSC3103 Assumed knowledge: HPSC (2100 and 2101) or HPSC (2001 and 2002). Assessment: Essays, take home tests, tutorial assessment.

The first part of this class examines the century of the gene from Darwin up to the present. We investigate the various conceptual changes that have occurred in this period, both directly within biology and within society at large. We will explore the disappearance of the Western Christian consensus, rivalries between scientists wedded to different theories and experimental practices, and the different approaches of evolutionary biology and molecular biology. It appears that the more we learn about genes the less agreement and certainty there is about what a gene really is. The second part of the course uses the idea of biological determinism and eugenics as an example of the interrelationships between science and society.
No previous study of biology is assumed.

Textbooks

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HPSC3022 Science and Society

Credit points: 6 Teacher/Coordinator: Dean Rickles Session: Semester 1 Classes: Two 1 hour lectures and two 1 hour tutorials per week. Prerequisites: At least 12 credit points of Intermediate HPSC units or Credit or better in at least 6 credit points of Intermediate HPSC units, and at least 24 credit points of Intermediate or Senior units. Prohibitions: HPSC3003 Assumed knowledge: HPSC (2100 and 2101) or HPSC (2001 and 2002). Assessment: Short essays, tutorial work, presentation.

Note: This unit is a requirement for HPS majors.

Science has become an essential element of Western societies. It is impossible to imagine our lives today without the achievements of science, technology, and medicine. Many scientists and laypeople think that scientific knowledge transcends political, social, cultural, and economic conditions. Sociologists of science think otherwise. In this unit, we will investigate the nature of science, the position of science in society, and the internal dynamics of science.
Sociologists of science have compared scientific knowledge to a ship in a bottle: if you see the finished product, you can't understand how it came about, and you can't believe that it is not what it claims to be: the empirically-determined truth about the world. In this unit, we will have a close look at some of these ships in bottles and examine how they got there. When observing science-in-the-making, rather than the finished product, the factors that influence science become much clearer. We will introduce some the most exciting and innovative ideas about what science is and how it works by examining the sociological and anthropological approaches to science that have become the basis for research in the social studies of science, technology, and medicine, including: the norms of science, scientists' images of themselves, the boundaries between science and other subjects, the rhetoric of scientific writing, laboratory work, science museums and science in the media.

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HPSC3023 Psychology & Psychiatry: History & Phil

Credit points: 6 Teacher/Coordinator: Dr Hans Pols and Dr Fiona Hibberd Session: Semester 1 Classes: Two 1 hour lectures and one 2 hour tutorial per week. Prerequisites: (at least 12 credit points of intermediate HPSC Units of study) OR (a CR or above in one HPSC intermediate Unit of Study) OR (12 intermediate credit points in psychology). Prohibitions: PSYC3202 Assumed knowledge: Basic knowledge about the history of modern science as taught in HPSC2100 AND the principles of philosophy of science as taught in HPSC2101 OR knowledge of the various sub-disciplines within Psychology. Assessment: Take-home essay (2500 words), one 2 hour exam, tutorial work.

Across the unit we examine one of the most interesting aspects of the history and philosophy of science. Viz., the scientific practices and assumptions involved in making human beings an object of study. We will examine the ways in which psychologists and psychiatrists have investigated human nature, the kinds of experimental approaches they have developed to that end, the major controversies in this field, and the basic philosophical assumptions that have been made in the sciences of human nature. We investigate the developments of psychological theories and investigative methods as well as the development of psychiatric theory, treatment methods, and institutions.

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HPSC3024 Science and Ethics

Credit points: 6 Teacher/Coordinator: HPS Staff Session: Semester 2 Classes: Two 1 hour lectures and two 1 hour tutorials per week. Prerequisites: At least 24 credit points of Intermediate or Senior units of study Prohibitions: HPSC3007 Assessment: Short essays, tutorial work, tests.

Note: This unit will not be offered every year.

Is science really neutral, impartial, and objective? Should it be? Or should it tell us what is right, good, fair, or just? Does scientific progress imply social progress and benefits for humanity? Are scientists responsible when their discoveries are used for evil purposes? Should the publication of dangerous discoveries be prevented? What if the same discoveries might be used for beneficial purposes as well?
In this unit, we give study possible answers to these questions by examining the relationships between science and human values. We consider the extent to which science is, or should be, influenced by the values of scientists and the societies in which they operate. And we question the extent to which science promotes or threatens the good of humankind. Issues such as these are pursued via philosophical examination of major historical episodes involving weapons of mass destruction, Nazi medicine, cloning, mind control in neuroscience, human experimentation and censorship. We also examine contemporary developments in genetics and brain science.
This unit is for science and non-science students alike. It will be of interest to anyone concerned about the social responsibilities of scientists, matters of science policy, and relationships between science and society.

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History and Philosophy of Science Honours

An Honours course in HPS is available to students of sufficient merit who have satisfied the requirements for the degree of BSc or BA or BLibSt with a major in HPS or another relevant area. Students who have obtained the TSP Certificate in HPS are also eligible for the Honours program. The Honours course consists of 48 points of Honours level units of study, which must include HPSC4201 HPS Research Project 1, HPSC4202 HPS Research Project 2, HPSC4203 HPS Research Project 3 and HPSC4204 HPS Research Project 4. In their final semester all students must also enrol in the zero credit point non-assessable unit HPSC4999. Students intending to proceed to Honours or to enrol in the Graduate Diploma in Science (HPS) are strongly advised to contact the Unit towards the end of the previous academic year to discuss thesis topic and supervision. Note: Honours level (4000) Units of Study are available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. A number of our Honours-level courses are also open to students in the medical humanities and liberal studies.

HPSC4101 Philosophy of Science

Credit points: 6 Teacher/Coordinator: Dean Rickles Session: Semester 1 Classes: One 2 hour seminar per week, individual consultation. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. Assessment: Written assignments, seminar participation.

Note: Department permission required for enrolment

The success of science in enabling us to manipulate the natural world has been so surprising, so often, that it has caused many individuals to revise a large part of their pre-scientific philosophical and religious consensus. Something very important is going on, and a number of fascinating philosophical topics emerge when we try to analyse what it is. Working backwards from the success of an epistemological enterprise offers a fruitful way to do philosophy, and, reciprocally, our philosophical insights help to clarify the contentious question of what it means to claim that science is successful.
This unit investigates the relationships between scientific theories and evidence, and the relationships between scientific theories. Participants will have an opportunity to relate the successes and failures of specific sciences to contemporary philosophical debates. Each week the seminar will discuss a piece of philosophical theory in the light of examples from particular sciences. Technical topics will be covered, but very little background knowledge will be assumed.

Textbooks

Blackburn S., The Oxford Dictionary of Philosophy, and course reader.

HPSC4102 History of Science

Credit points: 6 Teacher/Coordinator: Ofer Gal Session: Semester 1,Semester 2 Classes: One 2 hour seminar per week. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. Assessment: Essays, seminar participation.

Note: Department permission required for enrolment

This unit explores major episodes in the history of science as well as introducing students to historiographic methods. Special attention is paid to developing practical skills in the history and philosophy of science.

Textbooks

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HPSC4103 Sociology of Science

Credit points: 6 Teacher/Coordinator: Dr Hans Pols Session: Semester 2 Classes: One 2 hour seminar per week, individual consultation. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. Assessment: Essays, fieldwork report, seminar participation mark.

Note: Department permission required for enrolment

This unit explores recent approaches in the social studies of scientific knowledge. Students evaluate various sociological approaches by conducting their own research on topics relevant to their own major thesis.
The unit starts with an overview of the development of history and philosophy of science since 1945, to put the emergence of the sociology of science into perspective, before moving on to a selection of readings from the field. Topics will include: the strong program critique of traditional philosophy of science, the sociology of technology, the impact of feminism on the study of science, and the actor-network approach developed by Bruno Latour and Michel Callon.

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HPSC4104 Recent Topics in HPS

Credit points: 6 Teacher/Coordinator: HPS Staff Session: Semester 1,Semester 2 Classes: One 2 hour seminar per week, individual consultation. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. Assessment: Essays, seminar participation.

Note: Department permission required for enrolment

An examination of one area of the contemporary literature in the history and philosophy of science. Special attention will be paid to development of research skills in the history and philosophy of science.

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HPSC4105 HPS Research Methods

Credit points: 6 Teacher/Coordinator: Hans Pols Session: Semester 1,Semester 2 Classes: One 2 hour seminar per week, individual consultation. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission. Assessment: Literature review, archival research project, seminar participation mark, short essays.

Note: Department permission required for enrolment

Adopting a seminar style, this unit provides students with an advanced knowledge of the skills necessarily to conduct their own original research in the sociology, history and philosophy of science. Participants will be given a weekly set of core readings, and specialists both from within the Unit and from outside will present their views on the topic in question. This presentation will form the basis for a discussion involving the students, the academic members of the Unit, and invited speakers.
Topics will include: the use of case studies in the philosophy of science, how to conduct oral history projects, institutional history, and sociological methodology.

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HPSC4108 Core topics: History & Philosophy of Sci

Credit points: 6 Teacher/Coordinator: HPS staff. Session: Semester 1,Semester 2 Classes: One 2 hour seminar per week. Prerequisites: Available only to students admitted to HPS Honours, Graduate Diploma in Science (History and Philosophy of Science) and Graduate Certificate in Science (History and Philosophy of Science), or by special permission Prohibitions: Not available to students who have completed a major in History and Philosophy of Science or an equivalent program of study at another institution. Assessment: Essays, seminar presentations, seminar participation mark.

Note: Department permission required for enrolment

An intensive reading course, supported by discussion seminars, in the main figures and events of the 'Scientific Revolution' of the 16th to 18th centuries, in the leading historiographic interpretations of the scientific revolution and in the use of episodes in the scientific revolution as evidence for the philosophies of science of Karl Popper, Imre Lakatos, Thomas Kuhn and contemporary authors.

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HPSC4201 HPS Research Project 1

Credit points: 6 Teacher/Coordinator: HPS Staff Session: Semester 1,Semester 2 Classes: Weekly individual supervision, fortnightly 90-minute research seminars. Prerequisites: Available only to students admitted to HPS Honours and Graduate Diploma or Certificate in Science (History and Philosophy of Science). Prohibitions: HPSC4106, HPSC4107 Assumed knowledge: HPSC (2001 and 2002) or HPSC (2100 and 2101) Assessment: HPSC4201, HPSC4202, HPSC4203 and HPSC4204 are jointly assessed by a research thesis of up to 15,000 words.

Note: Department permission required for enrolment

Research into a topic in history, philosophy or sociology of science under the supervision of one or more members of the HPS staff.

HPSC4202 HPS Research Project 2

Credit points: 6 Teacher/Coordinator: HPS Staff Session: Semester 1,Semester 2 Classes: Weekly individual supervision, fortnightly 90-minute research seminars. Prerequisites: Available only to students admitted to HPS Honours and Graduate Diploma or Certificate in Science (History and Philosophy of Science). Prohibitions: HPSC4106 and HPSC4107 Assumed knowledge: HPSC (2001 and 2002) or HPSC (2100 and 2101) Assessment: HPSC4201, HPSC4202, HPSC4203 and HPSC4204 are jointly assessed by a research thesis of up to 15,000 words.

Note: Department permission required for enrolment

Research into a topic in history, philosophy or sociology of science under the supervision of one or more members of the HPS staff.

HPSC4203 HPS Research Project 3

Note: Department permission required for enrolment

Research into a topic in history, philosophy or sociology of science under the supervision of one or more members of the HPS staff.

HPSC4204 HPS Research Project 4

Note: Department permission required for enrolment

Research into a topic in history, philosophy or sociology of science under the supervision of one or more members of the HPS staff.

HPSC4999 History & Philosophy of Science Honours

Session: Semester 1,Semester 2 Prerequisites: Available only to students admitted to HPS Honours.

Note: Department permission required for enrolment

All students in History and Philosophy of Science Honours must enrol in this non-assessable unit of study in their final semester.

Immunobiology major

The Discipline of Infectious Diseases and Immunology administers the Immunobiology Major. Our location is on Level 6, Blackburn Building D06. Further information from Helen Briscoe (phone: (02) 9351 7308, email: hbriscoe@med.usyd.edu.au). A major in Immunobiology requires successful completion of 12 credit points of Senior study in Immunology plus 12 credit points from the elective Senior units of study in Biochemistry, Biology, Cell Pathology, Molecular Biology and Genetics, Microbiology, Physiology or Virology listed in Table I. Participants in the Immunobiology major will select accompanying Senior units according to their particular interest. Concurrent study in the life science disciplines will add a depth of understanding in a particular aspect of immunology. Participants are invited to consult with Helen Briscoe and with elective unit of study co-ordinators before selecting concurrent study units and should note that a unit of study taken as part of the Immunobiology Major cannot count towards a major in another Science discipline area.

Immunology

Immunology is offered as Introductory Immunology (IMMU2101) at Intermediate level, Molecular and Cellular Immunology (IMMU3102) and Immunology in Human Disease (IMMU3202) at Senior level, and Immunology Honours. Further information can be obtained from Helen Briscoe (phone: (02) 9351 7308, email: hbriscoe@med.usyd.edu.au).

Immunology intermediate units of study

IMMU2101 Introductory Immunology

Credit points: 6 Teacher/Coordinator: A/Prof Helen Briscoe Session: Semester 1 Classes: Two 1 hour lectures per week, one 3 hour tutorial or practical or independent study per week. Prerequisites: 24 credit points of Junior units of study from any of the Science discipline areas. Prohibitions: IMMU2001, BMED2506, BMED2807 Assumed knowledge: Junior Biology and Junior Chemistry. Assessment: One 2 hour examination (60%), one 2000 word essay (20%), online quizzes and tutorial group presentation (20%)

Note: This is a prerequisite unit of study for IMMU3102 and IMMU3202. The completion of 6 credit points of MBLG units of study is highly recommended.

This unit of study will provide an overview of the human immune system and essential features of immune responses. The lecture course begins with a study of immunology as a basic research science. This includes the nature of the cells and molecules that recognise antigens and how these cells respond at the cellular and molecular levels. Practical/tutorial sessions will illustrate particular concepts introduced in the lecture program. Further lectures and self-directed learning sessions will integrate this fundamental information into studies of mechanisms of host defence against infection, transplantation, and dysfunction of the immune system including allergy, immunodeficiency and autoimmune diseases.

Textbooks

Abbas, AK, Lichtman, AH. Basic Immunology Functions and Disorders of the Immune System.

Immunology senior units of study

IMMU3102 Molecular and Cellular Immunology

Credit points: 6 Teacher/Coordinator: Dr Allison Abendroth Session: Semester 2 Classes: Three 1 hour lectures, one tutorial and one practical per fortnight. Prerequisites: BMED2807 or BMED2506 or IMMU2101 or IMMU2001 and 6cp of Intermediate units of study from Biochemistry or Biology or Microbiology or Molecular Biology and Genetics or Pharmacology or Physiology. Prohibitions: IMMU3002, BMED3003 Assumed knowledge: Intermediate biochemistry and molecular biology and genetics. Assessment: Formal examination: 60% one 2 hour exam. Progressive assessment: 40% includes practical assessment (lab quizzes/practical assignment), 2000word essay, tutorial presentation

Note: The completion of 6 CP of MBLG units of study is highly recommended. Concurrent study of IMMU3202 Immunology in Human Disease is strongly recommended.

This study unit builds on the series of lectures that outlined the general properties of the immune system, effector lymphocytes and their functions, delivered in the core courses, IMMU2101 - Introductory Immunology and BMED2807 -Microbes & Body Defences (formerly IMMU2001 and BMED2506). In this unit the molecular and cellular aspects of the immune system are investigated in detail. We emphasise fundamental concepts to provide a scientific basis for studies of the coordinated and regulated immune responses that lead to elimination of infectious organisms. Guest lectures from research scientists eminent in particular branches of immunological research are a special feature of the course. These provide challenging information from the forefront of research that will enable the student to become aware of the many components that come under the broad heading 'Immunology'. Three lectures (1 hour each) will be given each fortnight: 2 lectures in one week and one lecture the following week, for the duration of the course. This unit directly complements the unit "Immunology in human disease IMMU3202" and students are strongly advised to undertake these study units concurrently.

Textbooks

Abbas, AK, Lichtman, AH, Cellular and Molecular Immunology 5th edition 2003. WB Saunders Company and/or Janeway, CA, Travers, P, Walport, M and Shlomchik, M. Immunobiology -the immune system in health and disease 6th edition. Garland Press. 2005.

IMMU3202 Immunology in Human Disease

Credit points: 6 Teacher/Coordinator: Dr Allison Abendroth Session: Semester 2 Classes: Three 1 hour lectures, one tutorial and one practical per fortnight. Prerequisites: BMED2807 or BMED2506 or IMMU2101 or IMMU2001 and 6cp of Intermediate units of study from Biochemistry, or Biology or Microbiology or Molecular Biology and Genetics or Pharmacology or Physiology. Prohibitions: IMMU3002, BMED3003 Assumed knowledge: Intermediate biochemistry and molecular biology and genetics. Assessment: Progressive assessment: 40% includes practical assignment, portfolio of case studies, poster presentation, tutorial presentation. Formal examination: 60% one 2 hour exam.

Note: The completion of 6CP of MBLG units of study is highly recommended. Concurrent study of IMMU3102 Molecular and Cellular Immunology is very strongly recommended.

This study unit builds on the series of lectures that outlined the general properties of the immune system, effector lymphocytes and their functions, delivered in the core courses, IMMU2101 - Introductory Immunology and BMED2807 - Microbes & Body Defences (formerly IMMU2001 and BMED2506). We emphasise fundamental concepts to provide a scientific basis for studies in clinical immunology; dysfunctions of the immune system e.g. autoimmune disease, immunodeficiencies, and allergy, and immunity in terms of host - pathogen interactions. This unit has a strong focus on significant clinical problems in immunology and the scientific background to these problems. The unit includes lectures from research scientists and clinicians covering areas such as allergy, immunodeficiency, autoimmune disease and transplantation. This course provides challenging information from the forefront of clinical immunology and helps the student develop an understanding of immune responses in human health and disease. Three lectures (1 hour each) will be given each fortnight: 2 lectures in one week and one lecture the following week, for the duration of the course. This unit directly complements the unit "Molecular and Cellular Immunology" and students are very strongly advised to undertake these study units concurrently.

Textbooks

Immunology Honours

The Honours program in Immunology provides the opportunity for full-time research on a proposed project supervised by a staff member expert in that field. Experimental research, a seminar and a thesis constitute the major part of the program and of assessment. Guidance in research techniques is given in training programs covering experimental design, data analysis, written and oral communication and critical appraisal of the literature. Student contributions to this program are also assessed. In addition, a supplementary seminar program keeps students informed and abreast of wider issues in immunology.

Applying for Honours

Students are invited to apply for Honours enrolment during semester two of the year preceding Honours. Applicants should consult the Honours coordinator in the first instance. A list of possible research topics is provided, and students select projects of interest, speak with prospective supervisors and apply for permission to enrol, before the end of semester two. Within the constraints of availability, an attempt is made to assign students to the project of their choice.

General Requirements for Admission

Usually Honours candidates will have achieved a Credit in Senior Immunology units of study and will also have successfully completed Senior study in Biochemistry, Biology, Cell Pathology, Microbiology, Physiology or Virology. BSc candidates will have gained a major in Immunobiology, or a related discipline such as Biochemistry, Biology, Cell Pathology, Microbiology or Physiology. Usually Honours candidates will have an overall SCIWAM of 65 or greater. Departmental permission is required for enrolment.

Honours coordinators

The Immunology Honours coordinator is Dr Allison Abendroth (allisona@med.usyd.edu.au, 9351 6867).

Information Technologies

Information Technologies in the Bachelor of Science degree

The School of Information Technologies is part of the Faculty of Engineering and Information Technologies. In addition to providing professional training in Computer Science and Information Systems leading toward bachelor level degrees, it offers many units of study that students who are enrolled in the Faculty of Science may take as a part of a major in either Information Systems or Computer Science or a minor in Information Technology. Details regarding the units of study required for the award of a Science major in Information Systems or Computer Science can be obtained from the Faculty of Science Handbook or from the website www.it.usyd.edu.au.

Special consideration applications for illness or misadventure

Students should note that applications for special consideration on grounds of illness or miasaventure for COMP, INFO, ISYS or ELEC units are processed by the Faculty of Engineering

Minor in IT

Students enrolled in non-IT degrees or majors who, are eligible (upon application) for a Minor in Information Technology if they complete at least 18 credit points of intermediate or above units of study offered by the School of IT, within a completed degree. For further information see www.it.usyd.edu.au/future_students/undergrad/minor.shtml.

Advanced standing for Science students transferring to BIT, BCST or BCST (Advanced)

Students enrolled in Science degrees or Science graduates may obtain advanced standing towards the Bachelor of Information Technology, Bachelor of Computer Science and Technology or Bachelor of Computer Science and Technology (Advanced) degrees. Students wishing to undertake this option must seek academic advice from the School of Information Technologies. Further details regarding admission to the BIT, BCST or BCST(Advanced) may be obtained from the Engineering and Information Technologies handbook or from the Faculty Office.

Computer Science

The requirements for a major in Computer Science are defined in Table 1. Computer Science is a scientific discipline which has grown out of the use of computers to manage and transform information. It is concerned with the design of computers, their applications in science, government and business, and the formal and theoretical properties which can be shown to characterise these applications. The current research interests in the School include algorithms, bioinformatics, data management, data mining and machine learning, internet working, wireless networks, network computing, biomedical image processing, parallel and distributed computing, user-adaptive systems and information visualisation. The School has a range of computers and specialised laboratories for its teaching and research.

Information Systems

The requirements for a major in Information Systems are defined in Table 1. Information Systems is the study of people and organisations in order to determine, and deliver solutions to meet, their technological needs. Hence Information Systems deals with the following type of issues: strategic planning, system development, system implementation, operational management, end-user needs and education. Information Systems study is related to Computer Science but the crucial distinction is that the Information Systems is about the architecture of computer systems and making them work for people, whereas much of Computer Science is about developing and improving the performance of computers. The School's research in Information Systems encompasses natural language processing, IT economics, social networking analysis, ontologies design, data mining and knowledge management and open source software.

Summer School: January-February

This School sometimes offers some units of study in The Sydney Summer School. Consult The Sydney Summer School web site for more information: www.summer.usyd.edu.au/

Computer Science and Information Systems junior units of study

See the School web site www.it.usyd.edu.au for advice on choosing appropriate units of study from this list.

INFO1003 Foundations of Information Technology

Credit points: 6 Session: Semester 1,Semester 2 Classes: (Lec 2 hrs & Prac 3hrs) per week Prohibitions: INFO (1903 or 1000) or INFS1000 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit prepares students from any academic discipline to develop the necessary knowledge, skills and abilities to be competent in the use of information technology for solving a variety of problems. The main focus of this unit is on modelling and problem solving through the effective use of IT. Students will learn how to navigate independently to solve their problems on their own, and to be capable of fully applying the power of IT tools in the service of their goals in their own domains while not losing sight of the fundamental concepts of computing.
Students are taught core skills related to general purpose computing involving a range of software tools such as spreadsheets, database management systems, internet search engines, HTML, and JavaScript. Students will undertake practical tasks including authoring an interactive website using HTML and JavaScript and building a small scale application for managing information. In addition, the course will address the many social, ethical, and intellectual property issues arising from the wide-spread use of information technology in our society.

INFO1103 Introduction to Programming

Credit points: 6 Session: Semester 1,Semester 2 Classes: (Lec 2hrs & Prac 3hrs) per week Prohibitions: INFO1903 or SOFT (1001 or 1901) or COMP (1001 or 1901) or DECO2011 Assumed knowledge: HSC Mathematics Assessment: In-course involvement, assignments, quizzes and written exam

This unit provides an introduction to programming using Java. The main aims are (i) to develop basic programming skills and (ii) learn how to express algorithms using computer programming and develop basic algorithmic problem solving skills.

INFO1903 Informatics (Advanced)

Credit points: 6 Session: Semester 1 Classes: (Lec 3hrs & Prac 3hrs) per week Prerequisites: UAI sufficient to enter BCST(Adv), BIT or BSc(Adv), or portfolio of work suitable for entry Prohibitions: INFO1003, INFO1103 Assumed knowledge: HSC Mathematics Assessment: In-course involvement, assignments, quizzes, lab exam and written exam

Note: Department permission required for enrolment

This unit covers advanced data processing and management, integrating the use of existing productivity software, e.g. spreadsheets and databases, with the development of custom software using the powerful general-purpose Python scripting language. It will focus on skills directly applicable to research in any quantitative domain. The unit will also cover presentation of data through written publications and dynamically generated web pages, visual representations and oral presentation skills. The assessment, a long project, involves the demonstration of these skills and techniques for processing and presenting data in a choice of domains.

Textbooks

Given the diversity of the material, the main resource for INFO1903 will be the course notes, which will be made available through the University Copy Centre.

INFO1105 Data Structures

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 3hrs) per week Prohibitions: INFO1905 or SOFT (1002 or 1902) or COMP (1002 or 1902 or 2160 or 2860 or 2111 or 2811 or 2002 or 2902) Assumed knowledge: Programming, as for INFO1103 Assessment: In-course involvement, assignments, quizzes and written exam

The unit will teach some powerful ideas that are central to quality software: data abstraction and recursion. It will also show how one can analyse the scalability of algorithms using mathematical tools of asymptotic notation. Contents include: both external "interface" view, and internal "implementation" details, for commonly used data structures, including lists, stacks, queues, priority queues, search trees, hash tables, and graphs; asymptotic analysis of algorithm scalability, including use of recurrence relations to analyse recursive code. This unit covers the way information is represented in each structure, algorithms for manipulating the structure, and analysis of asymptotic complexity of the operations. Outcomes include: ability to write code that recursively performs an operation on a data structure; experience designing an algorithmic solution to a problem using appropriate data structures, coding the solution, and analysing its complexity.

INFO1905 Data Structures (Advanced)

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 3hrs) per week Prerequisites: Distinction-level performance in INFO1103 or INFO1903 or SOFT1001 or SOFT1901. Prohibitions: INFO1105 or SOFT (1002 or 1902) or COMP (1002 or 1902) Assessment: In-course involvement, assignments, quizzes and written exam

An advanced alternative to INFO1105; covers material at an advanced and challenging level. See the description of INFO1105 for more information.

Computer Science and Information Systems intermediate units of study

It is important to choose second year subjects appropriately to keep options open for further study. See www.it.usyd.edu.au for advice.

COMP2007 Algorithms and Complexity

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: COMP (2907 or 3309 or 3609 or 3111 or 3811) Assumed knowledge: INFO1105, MATH1004 or MATH1904Discrete Maths Assessment: In-course involvement, assignments, quizzes and written exam.

This unit provides an introduction to the design and analysis of algorithms. The main aims are (i) to learn how to develop algorithmic solutions to computational problem and (ii) to develop understanding of algorithm efficiency and the notion of computational hardness.

COMP2907 Algorithms and Complexity (Advanced)

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prerequisites: Distinction level result in INFO (1105 or 1905) or SOFT (1002 or 1902) Prohibitions: COMP (2007 or 3309 or 3609 or 3111 or 3811) Assessment: In-course involvement, assignments, quizzes and written exam

An advanced alternative to COMP2007; covers material at an advanced and challenging level. See the description of COMP2007 for more information.

COMP2129 Operating Systems and Machine Principles

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: SOFT (2130 or 2830 or 2004 or 2904) or COMP (2004 or 2904) Assumed knowledge: Programming, as from INFO1103 Assessment: In-course involvement, assignments, quizzes and written exam.

In this unit of study elementary methods for developing robust, efficient and re-usable software will be covered. The unit is taught in C, in a Unix environment. Specific coding topics include memory management, the pragmatic aspects of implementing data structures such as lists and hash tables and managing concurrent threads. Debugging tools and techniques are discussed and common programming errors are considered along with defensive programming techniques to avoid such errors. Emphasis is placed on using common Unix tools to manage aspects of the software construction process, such as version control and regression testing. The subject is taught from a practical viewpoint and it includes a considerable amount of programming practice, using existing tools as building blocks to complete a large-scale task.

INFO2110 Systems Analysis and Modelling

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: INFO (2810 or 2000 or 2900) Assumed knowledge: Experience with a data model as in INFO1003 or INFO1103 or INFS1000 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit provides a comprehensive introduction to the analysis of complex systems. Key topics are the determination and expression of system requirements (both functional and non-functional), and the representation of structural and behavioural models of the system in UML notations. Students will be expected to evaluate requirements documents and models as well as producing them. This unit covers essential topics from the ACM/IEEE SE2004 curriculum, especially from MAA Software Modelling and Analysis.

INFO2120 Database Systems 1

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: INFO (2820 or 2005 or 2905) Assumed knowledge: Some exposure to programming and some familiarity with data model concepts such as taught in INFO1103 or INFO1003 or INFS1000 or INFO1903 Assessment: In-course involvement, assignments, quizzes and written exam.

The proper management of data is essential for all data-centric applications and for effective decision making within organizations. This unit of study will introduce the basic concepts of database designs at the conceptual, logical and physical levels. Particular emphasis will be placed on introducing integrity constraints and the concept of data normalization which prevents data from being corrupted or duplicated in different parts of the database. This in turn helps in the data remaining consistent during its lifetime. Once a database design is in place, the emphasis shifts towards querying the data in order to extract useful information. The unit will introduce different query languages with a particular emphasis on SQL, which is industry standard. Other topics covered will include the important concept of transaction management, application development with a backend database, an overview of data warehousing and online analytic processing, and the use of XML as a data integration language.

INFO2820 Database Systems 1 (Advanced)

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prerequisites: Distinction-level result in INFO (1003 or 1103 or 1903 or 1105 or 1905) or SOFT (1001 or 1901 or 1002 or 1902) Prohibitions: INFO (2120 or 2005 or 2905) Assessment: In-course involvement, assignments, quizzes and written exam.

An advanced alternative to INFO2120; covers material at an advanced and challenging level. See the description of INFO2120 for more information.

INFO2315 Introduction to IT Security

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: NETS (3305 or 3605 or 3016 or 3916) or ELEC (5610 or 5616) Assumed knowledge: Computer literacy Assessment: In-course involvement, assignments, quizzes and written exam.

This unit provides a broad introduction to the field of IT security. We examine secure and insecure programs, secure and insecure information, secure and insecure computers, and secure and insecure network infrastructure. Key content includes the main threats to security; how to analyse risks; the role in reducing risk that can be played by technical tools (such as encryption, signatures, access control, firewalls, etc); the limitations of technical defences; and the simple process and behavioural changes that can reduce risk.

ISYS2140 Information Systems

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: ISYS (2006 or 2007) Assumed knowledge: INFO1003 or INFS1000 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit of study will provide a comprehensive conceptual and practical introduction to information systems (IS) in contemporary organisations. Content: General Systems Theory; Basic concepts of organisations, systems and information; The role of information systems in operating and managing organisations; How IS and the Internet enables organisations to adopt more competitive business models, including e-Commerce; The technologies that underpin IS; Distributed systems, including security, networking principles, the client server model and how distributed components locate and communicate with each other; The integration of disparate systems both within the organisation and between organisations, including the role of XML; Behavioural, managerial and ethical issues in implementing and managing IS.

Textbooks

Management Information Systems: Managing the Digital Firm, 8th Edition, Kenneth C. Laudon & Jane P. Laudon, Prentice Hall 2004

Computer Science and Information Systems senior units of study in the BSc

Students are advised that doing less than 24 Senior credit points is not regarded as adequate preparation for a professional career in computing or for further study. Students are advised to balance their workload between semesters. It is important to choose second year subjects appropriately to keep options open for further study. See www.it.usyd.edu.au for advice.

COMP3109 Programming Languages and Paradigms

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Assumed knowledge: COMP2007 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit provides an introduction to the foundations of programming languages and their implementation. The main aims are to teach what are: grammars, parsers, semantics, programming paradigms and implementation of programming languages.

COMP3308 Introduction to Artificial Intelligence

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Tut 2hrs) per week Prohibitions: COMP (3608 or 3002 or 3902) Assumed knowledge: COMP2007 Assessment: Assignments, written exam.

Artificial Intelligence (AI) is all about programming computers to perform tasks normally associated with intelligent behaviour. Classical AI programs have played games, proved theorems, discovered patterns in data, planned complex assembly sequences and so on. This unit of study will introduce representations, techniques and architectures used to build intelligent systems. It will explore selected topics such as heuristic search, game playing, machine learning, and knowledge representation. Students who complete it will have an understanding of some of the fundamental methods and algortihms of AI, and an appreciation of how they can be applied to interesting problems. The unit will involve a practical component in which some simple problems are solved using AI techniques.

Textbooks

S.J. Russell and P.Norvig, Artificial Intelligence, A Modern Approach, 2d edition

COMP3608 Intro. to Artificial Intelligence (Adv)

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week. Prerequisites: Distinction-level results in some 2nd year COMP or MATH or SOFT units. Prohibitions: COMP (3308 or 3002 or 3902) Assessment: Assignments, written exam.

An advanced alternative to COMP3308; covers material at an advanced and challenging level. See the description of COMP3308 for more information.

Textbooks

S.J. Russell and P.Norvig, Artificial Intelligence, A Modern Approach, 2d edition

COMP3419 Graphics and Multimedia

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: MULT (3306 or 3606 or 3019 or 3919 or 3004 or 3904) or COMP(3004 or 3904) Assumed knowledge: COMP2007, MATH1002 Assessment: In-course involvement, assignments, quizzes and written exam.

Computer Graphics and Multimedia are core technologies to support an interdisciplinary computing and communication environment. This unit provides a broad introduction to the field of multimedia to meet the diverse requirements of application areas such as entertainment, industrial design, virtual reality, intelligent media management, medical imaging and remote sensing. The unit covers both the underpinning theories and the practices of manipulating and enhancing digital media including image, computer graphics, audio, computer animation, and video. It introduces principles and cutting-edge techniques such as multimedia data processing, content analysis, media retouching, media coding and compression. It elaborates on various multimedia coding standards. A particular focus is on principles and the state-of-the-art research and development topics of Computer Graphics such as modelling, rendering and shading, and texturing.

COMP3456 Computational Methods for Life Sciences

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prerequisites: INFO1105 and (COMP2007 or INFO2120) and 6 credit points from BIOL or MBLG Assessment: In-course involvement, assignments, quizzes and written exam.

This unit introduces the algorithmic principles driving advances in the life sciences. It discusses biological and algorithmic ideas together, linking issues in computer science and biology and thus is suitable for students in both disciplines. Students will learn algorithm design and analysis techniques to solve practical problems in biology.

COMP3520 Operating Systems Internals

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: NETS (3304 or 3604 or 3009 or 3909) or COMP (3009 or 3909) Assumed knowledge: COMP2129, INFO1105 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit will provide a comprehensive discussion of relevant OS issues and principles and describe how those principles are put into practice in real operating systems. The contents include internal structure of OS; several ways each major aspect (process scheduling, inter-process communication, memory management, device management, file systems) can be implemented; the performance impact of design choices; case studies of common OS (Linux, MS Windows NT, etc). The contents also include concepts of distributed systems: naming and binding, time in distributed systems, resource sharing, synchronization models (distributed shared memory, message passing), fault-tolerance, and case study of distributed file systems.

COMP3615 Software Development Project

Credit points: 6 Session: Semester 2 Classes: (Meeting with academic supervisor 1hr & Class meeting 1hr) per week Prerequisites: INFO3402 Prohibitions: INFO3600 or SOFT (3300 or 3600 or 3200 or 3700) Assessment: Individual presentation, oral examination and group report.

This unit will provide students an opportunity to apply the knowledge and practise the skills acquired in the prerequisite and qualifying units, in the context of designing and building a substantial software development system in diverse application domains including life sciences. Working in groups students will need to carry out the full range of activities including requirements capture, analysis and design, coding, testing and documentation.

INFO3220 Object Oriented Design

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2 hrs) per week Prohibitions: SOFT (3301 or 3601 or 3101 or 3801) or COMP (3008 or 3908) Assumed knowledge: INFO2110, INFO1105 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit covers essential design methods and language mechanisms for successful object-oriented design and programming. C++ is used as the implementation language and a special emphasis is placed on those features of C++ that are important for solving real-world problems. Advanced software engineering features, including exceptions and name spaces are thoroughly covered.

INFO3315 Human-Computer Interaction

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: MULT (3307 or 3607 or 3018 or 3918) or SOFT (3102 or 3802) or COMP (3102 or 3802) Assumed knowledge: INFO2110 Assessment: In-course involvement, assignments, quizzes and written exam.

This unit will introduce techniques to evaluate software user interfaces using heuristic evaluation and user observation techniques. Students will (i) learn how to design formal experiments to evaluate usability hypothesis and (ii) apply user centered design and usability engineering principles to design software user interfaces. A brief introduction to the psychological aspects of human-computer interaction will be provided.

INFO3402 Management of IT Projects and Systems

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 2hrs) per week. Prohibitions: ISYS (3000 or 3012) or ELEC3606 Assumed knowledge: INFO (2000 or 2110 or 2810 or 2900) Assessment: In-course involvement, assignments, quizzes and written exam.

This course introduces the basic processes and techniques for managing IT projects, systems and services, throughout the IT lifecycle. It addresses both the technical and behavioural aspects of IT management at the enterprise level. Major topics include: organisational strategy and IT alignment, IT planning, project planning, tracking, resource estimation, team management, software testing, delivery and support of IT services, service level agreements, change and problem management, cost effectiveness and quality assurance.

Textbooks

Martin, E. W., C. V. Brown, et al. (2002). Managing Information Technology. New Jersey, Pearson Education Inc.

INFO3404 Database Systems 2

Credit points: 6 Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prohibitions: INFO (3504 or 3005 or 3905) or COMP (3005 or 3905) Assumed knowledge: Introductory database study such as INFO2120 or INFO2820 or INFO2005 or INFO2905. Students are expected to be familiar with SQL and the relational data model, and to have some programming experience. Assessment: In-course involvement, assignments, quizzes and written exam.

This unit of study provides a comprehensive overview of the internal mechanisms of Database Management Systems (DBMS) and other systems that manage large data collections. These skills are needed for successful performance tuning, to understand the scalability challenges faced by the information age. Topics include: the internal components of a DBMS engine, physical data organization and disk-based index structures, query processing and optimisation, locking and logging, database tuning, distributed and replicated databases, web search engines, and indices and processing when doing information retrieval from textual data. This unit will be valuable to those pursuing such careers as Software Engineers, Database Experts, Database Administrators, Web Developers and e-Business Consultants.

INFO3504 Database Systems 2 (Adv)

Credit points: 6 Teacher/Coordinator: - Session: Semester 2 Classes: (Lec 2hrs & Prac 2hrs) per week Prerequisites: Distinction-level result in INFO (2120 or 2820) or COMP (2007 or 2907) Prohibitions: INFO (3404 or 3005 or 3905) or COMP (3005 or 3905) Assessment: In-course involvement, assignments, quizzes and written exam.

An advanced alternative to INFO3404; covers material at an advanced and challenging level. See the description of INFO3404 for more information.

INFO3600 Major Development Project (Advanced)

Credit points: 12 Session: Semester 2 Prerequisites: INFO3402 Prohibitions: COMP3615 or ISYS3400 or SOFT (3300 or 3600 or 3200 or 3700) Assessment: Individual presentation, oral examination and group report.

Note: Only available to students in BIT, BCST(Adv) or BSc(Adv)

This unit will provide students an opportunity to carry out substantial aspects of a significant software development project. The project will be directed towards assisting a client group (from industry or with strong industry links). The student's contribution could cover one or more aspects such as requirements capture, system design, implementation, change management, upgrades, operation, and/or tuning. Assessment will be based on the quality of the delivered outputs, the effectiveness of the process followed, and the understanding of the way the work fits into the client's goals, as shown in a written report.

ISYS3400 Information Systems Project

Credit points: 6 Session: Semester 2 Classes: (Meeting with academic supervisor 1hr & Class meeting 1hr) per week Prerequisites: (INFO3402 or ISYS3012) and (ISYS3401 or ISYS3015) Prohibitions: INFO3600 or ISYS3207 Assumed knowledge: INFO2120 Assessment: Individual presentation, oral examination, group report

This unit will provide students an opportunity to apply the knowledge and practise the skills acquired in the prerequisite and qualifying units, in the context of a substantial information systems research or development project and to experience in a realistic way many aspects of analysing and solving information systems problems. Since information systems projects are often undertaken by small teams, the experience of working in a team is seen as an important feature of the unit. Students often find it difficult to work effectively with others and will benefit from the opportunity provided by this unit to further develop this skill.

ISYS3401 Analytical Methods & Information Systems

Credit points: 6 Session: Semester 1 Classes: (Lec 2hrs & Prac 1hr) per week Prohibitions: ISYS3015 Assumed knowledge: INFO2110, ISYS2140 Assessment: In-course involvement, assignments, quizzes and written exam.

This course will provide an introduction to the scientific approach and basic research methods that are relevant for conceptualizing and solving complex problems encountered Information Systems practice. A collection of different methods for collecting and analyzing information will be studied in the context of a few typical information system projects. These methods include surveys, controlled experiments, questionnaire design and sampling.

Textbooks

Leedy P. and Ornrod J. Practical Research: planning and design (7th ed). Prentice Hall

Computer Science or Information Systems Honours in the BSc

To be awarded Honours in Computer Science, a student must complete units of study (as specified below) to a total of 48 credit points. Note that the Faculty requires that Honours be completed in two consecutive semesters of full-time study, or four consecutive semesters of part-time study; a single final grade and mark is given for the Honours course, as determined by the Faculty based on performance in Honours and in prior undergraduate study.

Honours units of study in Computer Science in the BSc

COMP4011 Computer Science Honours A

Credit points: 12 Session: Semester 1,Semester 2

Note: Department permission required for enrolment

Students enrolled in the Honours programs study various advanced aspects of Computer Science. The program may include lectures, tutorials, seminars and practicals. They will undertake a research project. Assessment will include the project and may include examinations and classwork.

COMP4012 Computer Science Honours B

Credit points: 12 Session: Semester 1,Semester 2

Note: Department permission required for enrolment

COMP4013 Computer Science Honours C

Credit points: 12 Session: Semester 1,Semester 2

Note: Department permission required for enrolment

COMP4014 Computer Science Honours D

Credit points: 12 Session: Semester 1,Semester 2

Note: Department permission required for enrolment

Honours units of study in Information Systems in the BSc

ISYS4301 Information Systems Honours A

Credit points: 12 Session: Semester 1,Semester 2

Note: Department permission required for enrolment

Students enrolled in the Honours programs study various advanced aspects of Information Systems. The program may include lectures, tutorials, seminars and practicals. They will undertake a research project. Assessment will include the project and may include examinations and classwork.

ISYS4302 Information Systems Honours B

Credit points: 12 Session: Semester 1,Semester 2 Corequisites: ISYS4301

See ISYS4301

ISYS4303 Information Systems Honours C

Credit points: 12 Session: Semester 1,Semester 2 Corequisites: ISYS4302

See ISYS4301

ISYS4304 Information Systems Honours D

Credit points: 12 Session: Semester 1,Semester 2 Corequisites: ISYS4303

See ISYS4301

Law units of study

The following units of study are only available to students in the Bachelor of Science/Bachelor of Laws degree. Please consult degree information in chapter 9, and the relevant Departments/Schools entries in this chapter for descriptions of other units of study required for this degree.

Curriculum Review

The Faculty of Law is undertaking a curriculum review, anticipated to be completed in 2007/2008. Combined law students are expected to complete 48 credit points of Law units of study in the first three years of the combined degree. Third year combined law students who are not able to accumulate 48 credit points of Law units of study using the unit of study codes in Table 2 as it appears in Chapter 9 must contact the Faculty of Law for alternative unit of study codes for Federal Constitutional Law and Law, Lawyers and Justice.

LAWS1006 Foundations of Law

Credit points: 6 Teacher/Coordinator: Professor David Kinley (Combined), Mr Fady Aoun (Graduate) Session: Semester 1 Classes: Combined: 1x1hr lec and 1x2hr seminar/wk; Graduate: The unit is taught to Graduate Law 1 students on an intensive basis over three weeks. The aim of this is to give students a good grounding in the basic legal skills needed for law studies before underta Prohibitions: LAWS1000 Assessment: Combined: class participation (20%), case analysis (30%), essay (50%); Graduate: class participation (20%), 1x1000wd essay (10%), 1x1800wd case assignment (20%) and 1x3000wd essay (50%)

This unit of study provides a foundation core for the study of law. We aim to provide a practical overview of the Australian legal system, an introduction to the skills of legal reasoning and analysis which are necessary to complete your law degree, and an opportunity for critical engagement in debate about the role of law in our lives. The course will introduce students to issues such as: (i) the development of judge made and statute law; (ii) the relationship between courts and parliament; (iii) the role and function of courts, tribunals and other forms of dispute resolution; (iv) understanding and interrogating principles of judicial reasoning and statutory interpretation; (v) the relationship between law, government and politics; (vi) what are rights in Australian law, where do they come from and where are they going; (vii) the development and relevance of international law.

LAWS1