Software

• McHugh LC and Arthur JW (2009) Harvest: An open-source tool for the validation and improvement of protein identification metrics. (C++ code; submitted for review; reviewers please use the direct link provided during submission)
• Jermiin LS (2003) Hetero: a program to simulate the evolution of DNA on a four-taxon tree (ANSI C Code) (Code link) (Paper link)
• Jermiin LS (2006) Homo: a program to assess stationarity in nucleotide and amino acid sequences (ANSI C Code - Available soon)
• Jayaswal (2005) BH: a program to estimate the likelihood of phylogenetic trees using a general Markov model (Java Code) (Code link)
• Ababneh F (2005) SymTest: three programs to do matched-pairs
  tests of homogeneity (R Code) (Code link)